1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagctgaagagacatttgtccccatccattttttggacactttggtcaaatttgtggactcttagcaataacatattttcttgttgcagGCTTGGAGTGTGCCTGAGGTCCTTAGACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCT
species | Oryza sativa |
transcript | LOC_Os03g43930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGGGGGTGGTTCCATGATTCACATTGTGGATCATGTTGATTTGGAT GCTTGGAGTGTGCCTGAGGTCCTTCGACCACTTTATGACAATCTCCTAAAGEST: gi|29625769|gb|CB630780.1|CB630780
genomic: GTGAGGGGGGTGGTTCCATGATTCACATTGTGGATCATGTTGATTTGGATgtgagctgaa ... cttgttgcagGCTTGGAGTGTGCCTGAGGTCCTTAGACCACTTTATGA-A-TCTCCTAA-G
EST: TGANNNNNNNTGGTTCCATGATTCACATTGTGGATCATGTTGATTTGGAT GCTTGGAGTGTGCCTGAGGTCCTTCGACCACTTTATGAATCTCCTAAGATC
genomic: TGAGGGGGG-TGGTTCCATGATTCACATTGTGGATCATGTTGATTTGGATgtgagctgaa ... cttgttgcagGCTTGGAGTGTGCCTGAGGTCCTTAGACCACTTTATGAATCTCCTAAGATC
ggacactttggtcaaatttgtggactcttagcaataacatattttcttgttgcagGCTTGGAGTGTGCCTGAGGTCCTTAGACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCT
caataac putative branch site (score: 10)
ttttcttgtt putative PPT
aataacatattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgaagagacatttgtccccatccattttttggacactttggtcaaatttgtggactcttagcaataacatattttcttgttgcagGCTTGGAGTGTGCCTGAGGTCCTTAGACCACTTTATGAATCTCCTAAGATCCTTGCGCAGAAGATGACAATTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG