1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagttggtacactgttcacctactaatattcatctctttatctccttgtgatccaagacaacttcctcttgcagCAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCA
species | Oryza sativa |
transcript | LOC_Os03g27990.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGTTTACCGGTACCATAGATGTCCTATCTGATCTCCCTCTAACTGACCT CAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGEST: gi|2317456|gb|C22510.1|C22510
genomic: CGGTTTACCGGTACCATAGATGTCCTATCTGATCTCCCTCTAACTGACCTgtaagttggt ... cctcttgcagCAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGG
EST: GGTTTACCGGTACCATAGATGTCCTATCTGGATCTCCCTCTAACTGACCT CAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGGATAAGCTAAAAGEST: gi|87006783|gb|CI285817.1|CI285817
genomic: GGTTTACCGGTACCATAGATGTCCTATCTG-ATCTCCCTCTAACTGACCTgtaagttggt ... cctcttgcagCAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTG-ATAAGCTAAAAG
EST: CGGTTTACCGGTACCATAGATGTCCTATCTGATCTCCCTCTAACTGACCT CAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGG
genomic: CGGTTTACCGGTACCATAGATGTCCTATCTGATCTCCCTCTAACTGACCTgtaagttggt ... cctcttgcagCAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGG
ctactaatattcatctctttatctccttgtgatccaagacaacttcctcttgcagCAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCA
tactaat putative branch site (score: 19)
cttcctcttgc putative PPT
aatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggtacactgttcacctactaatattcatctctttatctccttgtgatccaagacaacttcctcttgcagCAACGTTCAAAACAATCAATTAAGTGGAGCAATTCCTGATAAGCTAAAAGGCATAAGTAATCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA