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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcacttataacttttggtatgctctcagtattataatggtcacacttgagcagttgttccttttttttttattctaatcatttatcttgtaaagGTTTCAGTATTTGATTCAGTTGTACAAGGAGGGGATGCTGTGTGGGAAGGATTACGTATATACGATGGGAAAGTGTTCAAACTTGATGAACACTTGGATA

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 8
--gtacatcacttataacttttggtatgctctcagtattataatggtcacacttgagcagttgttccttttttttttattctaatcatttatcttgtaaagGTTTCAGTATTTGATTCAGTTGTACAAGGAGGGGATGCTGTGTGGGAAGGATTACGTATATACGATGGGAAAGTGTTCAAACTTGATGAACACTTGGATA
   ||  |||||  || ||| ||| ||||   || ||||| ||    || | |  |        ||  |   || ||  |||||| || | |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||| | |||||||| ||||| |
gtatatgtcactggtaccttgtggcatgccaccattattagaa----catagtaaa-------ctctctacattctttctctaataatctttcttgtaaagGTTTCAGTGTTTGATTCAGTTGTACAAGGAGGAGATGCTGTTTGGGAAGGTTTACGTATATATGATGGAAAAGTATTCAAATTAGATGAACATTTGGACA

upper sequence: LOC_Os03g24460.2 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S180_110V6.1 (Physcomitrella patens), 3'ss of exon 8
------------------------------------------------------------gtacatcacttataacttttggtatgctctcagtattataatggtcacacttgagcagttgttccttttt-----tttttattcta-atcatttatcttgtaaagGTTTCAGTATTTGATTCAGTTGTACAAGGAGGGGATGCTGTGTGGGAAGGATTACGTATATACGATGGGAAAGTGTTCAAACTTGATGAACACTTGGATA
                                                             ||  | |  |  |  | |  ||||| | | || | |    ||   |   ||||        |  |||||     |  ||||   | |||||||   | |   ||||||| |||||||||||  |||| |||||||| ||||  |||||||||||| | || || ||  | || ||||||||||| || || || ||  | || |
gttagtgatgacaattctattgctccctttcgaaataactcaggaactttagtaaggtctctattttatattcaggtgtaagtatg-tttaagcacttggttgagaagttttgaatgacgagttgtttttagtagtgcttatcagacatcattttcttggatcagGTTTCTGTATTTGATTCGATTGTGCAAGGAGGAGATGGAGTGTGGGAAGGACTTCGGATTTATAAGGGTAAAGTGTTCAAGCTAGAGGAGCATCTAGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacacttgagcagttgttccttttttttttattctaatcatttatcttgtaaagGTTTCAGTATTTGATTCAGTTGTACAAGGAGGGGATGCTGTGTGGGAAGGATTACGTATATACGATGGGAAAGTGTTCAAACTTGATGAACACTTGGATA
                                ttctaat  putative branch site (score: 2)
                                         tttatctt  putative PPT
                     ttttttttttattcta  TA-rich tract