1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatttcactgtcacagtttttattattctgtatgtagcgaccctgaagaattgtgctgtgacaggtagtcttacgctttgcatgttttgttttatcctagATTGATTCAGCCATAGAAGAGGGTGTTGAGATTCTTAAGTTGGTTGTTACCAAGGGTTTGACAGAGGCTGCAAGATCATCAAATGTGGATCAGAAGTATA
species | Oryza sativa |
transcript | LOC_Os03g22610.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
aagaattgtgctgtgacaggtagtcttacgctttgcatgttttgttttatcctagATTGATTCAGCCATAGAAGAGGGTGTTGAGATTCTTAAGTTGGTTGTTACCAAGGGTTTGACAGAGGCTGCAAGATCATCAAATGTGGATCAGAAGTATA
gtcttac putative branch site (score: 3)
ttttgttttatcct putative PPT
atgttttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcactgtcacagtttttattattctgtatgtagcgaccctgaagaattgtgctgtgacaggtagtcttacgctttgcatgttttgttttatcctagATTGATTCAGCCATAGAAGAGGGTGTTGAGATTCTTAAGTTGGTTGTTACCAAGGGTTTGACAGAGGCTGCAAGATCATCAAATGTGGATCAGAAGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -ttcactg
- - - - - - - - - - - - - -ctgtatg
- - - - - - - - - - - - - - - - - - - - ccctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt