1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaataaaaacttaacatcaagtttgtaaatgtacagatacctgtttgtaccgtgtgctcctcttttcatctctctaactggccctgatttctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGACGCAGATGTGAAGGTTAGGGACTTCGATCCCGAGGACTAATCATTTGAT
species | Oryza sativa |
transcript | LOC_Os03g21914.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATTACAGCATGGTGAATTTCATCCCACTTGACTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGAAGAEST: gi|86259754|gb|CI065627.1|CI065627
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|163929298|gb|EG711035.1|EG711035
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|88516777|gb|CI442433.1|CI442433
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|88239119|gb|CI240281.1|CI240281
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|88481114|gb|CI418385.1|CI418385
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: CATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|88436774|gb|CI521525.1|CI521525
genomic: CATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|27546018|gb|CA764157.2|CA764157
genomic: GGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAGCTGCATCCAGTATGGGGAAGAEST: gi|88296035|gb|CI535198.1|CI535198
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: TTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|58679583|gb|CK068270.1|CK068270
genomic: TTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAGGTGCATCCAGTATGGGGAAGAEST: gi|33679512|gb|CF307751.1|CF307751
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGACTTAAGAAAAGAGAGCAG CATTCAGTATTGTGCTGTCGCACATCGACAACTGCAEST: gi|86886652|gb|CI312537.1|CI312537
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTAT-GTGCTGTCGCACATCGACAACTGCA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|88509021|gb|CI436527.1|CI436527
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|88459826|gb|CI524285.1|CI524285
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: AGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|313079574|gb|HO213132.1|HO213132
genomic: AGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAGCTGCATCCAGTATGGGGAAGAEST: gi|58663098|gb|CK051784.1|CK051784
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAGCTGCATCCAGTATGGGGAAGAEST: gi|88257250|gb|CI359638.1|CI359638
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|44673938|gb|CR287372.1|CR287372
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAGCTGCATCCAGTATGGGGAAGAEST: gi|89179770|gb|CI044049.1|CI044049
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGAEST: gi|8857451|gb|AU094769.1|AU094769
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAG CATTCCAGTAAT-NGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAEST: gi|218503197|gb|FG958153.1|FG958153
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATT-CAGT-ATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTA
EST: GATTACAGCATGGTGAATTTCATCCCACTTGATTTACGACAAGAGAGCAA CATTCAGTATGTGCTGTCGCACATCGACAGCTGCATCCAGTATGGGG
genomic: GATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGAGCAGgtaatgccgt ... ctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGG
tgtaccgtgtgctcctcttttcatctctctaactggccctgatttctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGACGCAGATGTGAAGGTTAGGGACTTCGATCCCGAGGACTAATCATTTGAT
ccctgatttctttttc CT-rich tract
atttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaataaaaacttaacatcaagtttgtaaatgtacagatacctgtttgtaccgtgtgctcctcttttcatctctctaactggccctgatttctttttccagCATTCAGTATGTGCTGTCGCACATCGACAACTGCATCCAGTATGGGGTAGACGCAGATGTGAAGGTTAGGGACTTCGATCCCGAGGACTAATCATTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
aaataaa
- - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggccctg