1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcactgctttattcccactacgtttcccaattattaggcttctacccatctaattatgctgccatttttgcgttctttcttttggtgtttatttctgtgcagGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGTGGAGTGTCAGCGTAGTTTTTAGGATGTTTAGCTCCCCTTTCTTTTCGTT
species | Oryza sativa |
transcript | LOC_Os03g21160.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTAAAGTAGTCCACAATGGAAGTGGCTGAAACCCTCTCCAGAAATCATA GAATACATGAAGCAAAGAAAGTGTNATCGGAATATAGGGGAAAAAAGGAGTEST: gi|87009541|gb|CI309062.1|CI309062
genomic: TGTAAAGTAGTCCACAATGGAAGTGGCTGAAACCCTCTCCAGAAATCATAgtaagcactg ... ttctgtgcagGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGT
EST: TGTAAAGTAGTCCACAATGGAAGTGGCTGAAACCCTCTCCAGAAATCATA GAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGT
genomic: TGTAAAGTAGTCCACAATGGAAGTGGCTGAAACCCTCTCCAGAAATCATAgtaagcactg ... ttctgtgcagGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGT
atctaattatgctgccatttttgcgttctttcttttggtgtttatttctgtgcagGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGTGGAGTGTCAGCGTAGTTTTTAGGATGTTTAGCTCCCCTTTCTTTTCGTT
atctaat putative branch site (score: 11)
tttatttct putative PPT
tgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcactgctttattcccactacgtttcccaattattaggcttctacccatctaattatgctgccatttttgcgttctttcttttggtgtttatttctgtgcagGAATACATGAAGCAAAGAAAGTGTTATCGGAATATAGGGGAAAAAAGGAGTGGAGTGTCAGCGTAGTTTTTAGGATGTTTAGCTCCCCTTTCTTTTCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG