1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcacttaatccttcctttattcccactatgcttccaaaataataagcctttcaccttctgattttgctgtcttgttttctttccgctccttttttctatttgtctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTGAAGTGTCAGCATAGTGTTAGCTCCCTTGTTTATTTCTTTTTGGTTGCC
species | Oryza sativa |
transcript | LOC_Os03g21140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA GAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTEST: gi|58664822|gb|CK053508.1|CK053508
genomic: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAgtaagcactt ... tctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGT
EST: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA GAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTEST: gi|86480759|gb|CI123392.1|CI123392
genomic: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAgtaagcactt ... tctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGT
EST: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA GAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTEST: gi|163925986|gb|EG712314.1|EG712314
genomic: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAgtaagcactt ... tctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGT
EST: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA GAACACAAGAAGCEST: gi|88960042|gb|CI381920.1|CI381920
genomic: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAgtaagcactt ... tctgtgacagGAACACAAGAAGC
EST: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA GAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTEST: gi|218490471|gb|FG964032.1|FG964032
genomic: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAgtaagcactt ... tctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGT
EST: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATA GAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGT
genomic: GGATGTAAAGTTCTCTGCAATGGATGAGTGAATCCCCCAGCCTAATCATAgtaagcactt ... tctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGT
ctgattttgctgtcttgttttctttccgctccttttttctatttgtctgtgacagGAACACAAGAAGCAAAAGAAAAGCGATAGTGGAATATAGGAGAAAAGGAGTGAAGTGTCAGCATAGTGTTAGCTCCCTTGTTTATTTCTTTTTGGTTGCC
ttctgat putative branch site (score: 21)
ctgtcttgttttcttt putative PPT
ttttttctatttgt TA-rich tract