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gtatgtttggaatttagagaagctatatcacatctctctttggtccttattttccatgttcctgatttcctgtgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG
species | Oryza sativa |
transcript | LOC_Os03g20520.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCTC-TGATGG TGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATAEST: gi|25803052|gb|CA759013.1|CA759013
genomic: TCCTCTTGATGGgtatgtttgg ... tgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATA
EST: AGCTTTCCTTTGGGGTAGAATTCCCCTGGTGTTGTCAATCCTCTTGATGG TGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATAEST: gi|8859147|gb|AU096465.1|AU096465
genomic: AGCTTTCCTTTGGGGTAGAATT-CCCTGGTGTTGTCAATCCTCTTGATGGgtatgtttgg ... tgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATA
EST: CCTCTTGATGG TGTAGAGTGGATNCAGGAGCNCACAAATGGATTAACCAGGAATGTACCAATEST: gi|701663|gb|D47954.1|D47954
genomic: CCTCTTGATGGgtatgtttgg ... tgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAA-CAGGAATGTACCAAT
EST: CAATCCTCTTGATGG TGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATAEST: gi|29657637|gb|CB653912.1|CB653912
genomic: CAATCCTCTTGATGGgtatgtttgg ... tgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATA
EST: AAGCTTTCCTTTGGGGTAGAATTCCCTGGTGTTGTCAATCCTCTTGATGG TGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATA
genomic: AAGCTTTCCTTTGGGGTAGAATTCCCTGGTGTTGTCAATCCTCTTGATGGgtatgtttgg ... tgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATA
tcacatctctctttggtccttattttccatgttcctgatttcctgtgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG
tcctgat putative branch site (score: 57)
tttcctgt CT-rich tract
ttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttggaatttagagaagctatatcacatctctctttggtccttattttccatgttcctgatttcctgtgtatttcagTGTAGAGTGGATACAGGAGCACACAAATGGATTAACAGGAATGTACCAATACTTTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA