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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaaatgctccagcttggctcagaactgaaagcagccaaataattgcatcaactaaccattaagctgatacacgttgtttcattattgtagTTGGCAGAAGACCTTGATGCCTGCCCAGTTTGGGTGATCAATGATG

Basic information

species Oryza sativa
transcript LOC_Os03g20420.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157650374|gb|EX450008.1|EX450008
EST:     TTTGGAATTATTGGACTGATGATGGACTAGGCTTTTTTGAGTTCCTTCAA                         TTGGCAGAAGACCTTGATGCCTGCCCAGTTTGGGTGATCAATGATG
genomic: TTTGGAATTATTGGACTGATGATGGACTAGGCTTTTTTGAGTTCCTTCAAgtaagtaaaa ... attattgtagTTGGCAGAAGACCTTGATGCCTGCCCAGTTTGGGTGATCAATGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaataattgcatcaactaaccattaagctgatacacgttgtttcattattgtagTTGGCAGAAGACCTTGATGCCTGCCCAGTTTGGGTGATCAATGATG
                                         tttcatt  CT-rich tract
                                         tttcattatt  TA-rich tract