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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcaaatttacagcatctttgtctgacataatttgcaaagtgtttaattaactgtctgacatgatggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACAAGGCATTATCTTCCAGGAAGCAGTGATCCTCATGCCAGTGGTTTGCGCC

Basic information

species Oryza sativa
transcript LOC_Os03g17980.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17980.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G107867_T04 (Zea mays), 3'ss of exon 7
gttagttcaaatttacagcatctt--tgtctgacataatttgcaaag---tgtttaattaactg-----tctgacat-------------gatggtt----cattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACAAGGCATTATCTTCCAGGAAGCAGTGATCCTCATGCCAGTGGTTTGCGCC
|||||| || ||| ||| || ||   |||   | | |  |    | |   | ||| ||  | ||     ||| |||               ||||||    |   |||| |||||||| ||||   | || ||||| |||||| | |||||   ||| ||| ||||| |||||||||||||||||||||||  |||||||||||| |
gttagtacacattaacaacacctgggtgttcaaaaaagatcttgagggtttatttgatctattgatgattctaacactattagatgtttgaatggttgcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGAGGAATTATGTTCCAGGAAGCAGTGATCCTCATAGCAGTGGTTTGCGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672731|gb|CB669006.1|CB669006
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|29673828|gb|CB670103.1|CB670103
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|58666104|gb|CK054790.1|CK054790
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCGTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATA
EST: gi|29616520|gb|CB621532.1|CB621532
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCGTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|218478287|gb|FG959067.1|FG959067
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCGTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|29663427|gb|CB659702.1|CB659702
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|218493226|gb|FG956765.1|FG956765
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCGTTG                         GAGAGGAA-TTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|29614996|gb|CB620009.1|CB620009
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCGTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
EST: gi|29672696|gb|CB668971.1|CB668971
EST:     GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTG                         GAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA
genomic: GATTCCGAGCTACCAGTGGCTATTTGGGAGCAGACTATCAAGAATCTTTGgttagttcaa ... ggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctgacataatttgcaaagtgtttaattaactgtctgacatgatggttcattagGAGAGGAATTTTAATCGCTTTGCTTCATCGGAATCAGCAAGTTCAAATACAAGGCATTATCTTCCAGGAAGCAGTGATCCTCATGCCAGTGGTTTGCGCC
                aaagtgtttaattaa  TA-rich tract