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gtacctttgctgattaggcccttttcgtaatgacgagtatatgcctcatggtggttttccctttgcagatggctatgcaaatattcaagcagtttctccgttttaattgtggatagctctgccttgtactaaaattttaaaattgtctactttaccttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG
species | Oryza sativa |
transcript | LOC_Os03g17930.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGEST: gi|38479504|gb|CF963613.1|CF963613
genomic: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
EST: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGEST: gi|40490411|gb|BX899913.1|BX899913
genomic: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
EST: ATT-AAGGTTGCAGCTAGCTGCTGATGGAGAAAGATT-CAGCAGTT-CAG GATGCC-TCACAAEST: gi|2431215|gb|C73635.1|C73635
genomic: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAA
EST: TTTAAGGTTGCAGCTAGCT-CTGAATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAANGTCTTTTGAGGACATACAAGEST: gi|88219408|gb|CI218968.1|CI218968
genomic: TTTAAGGTTGCAGCTAGCTGCTGA-TGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAA-GTCTTT-GAG-ACATACAAG
EST: AGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGEST: gi|29639434|gb|CB644443.1|CB644443
genomic: AGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
EST: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGEST: gi|86499080|gb|CI141713.1|CI141713
genomic: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
EST: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACCAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGEST: gi|58675688|gb|CK064375.1|CK064375
genomic: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
EST: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGEST: gi|86425721|gb|CI070818.1|CI070818
genomic: ATTTAAGGTTGCAGCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
EST: GCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAG GATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
genomic: GCTAGCTGCTGATGGAGAAAGATTTCAGCAGTTTCAGgtacctttgc ... accttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATG
gtggatagctctgccttgtactaaaattttaaaattgtctactttaccttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG
tactaaa putative branch site (score: 1)
ctttacctt putative PPT
tactaaaattttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctttgctgattaggcccttttcgtaatgacgagtatatgcctcatggtggttttccctttgcagatggctatgcaaatattcaagcagtttctccgttttaattgtggatagctctgccttgtactaaaattttaaaattgtctactttaccttatcagGATGCCCTCACAAAAAGCAATGAAGTCTTTGAGACATACAAGAAGGAGATGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA