1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatatttttagttcatacctttttgtcttgtgatgtactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
species | Oryza sativa |
transcript | LOC_Os03g16980.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGNGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTEST: gi|30229035|gb|CB966926.1|CB966926
genomic: CGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATG-GCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATT
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGATTTGC-AGGATTT-CAACAC-TATGGACCTAGGATGAACCTTGEST: gi|38478163|gb|CF962296.1|CF962296
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|30226568|gb|CB964460.1|CB964460
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|313080404|gb|HO213412.1|HO213412
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|33675428|gb|CF303667.1|CF303667
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|29668646|gb|CB664921.1|CB664921
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|58672962|gb|CK061648.1|CK061648
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|30226636|gb|CB964528.1|CB964528
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGAGCTAGGATGAACATTGEST: gi|58659773|gb|CK048453.1|CK048453
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATTGACCTAGGATGAACATTGEST: gi|58590735|gb|CF989043.1|CF989043
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|33380802|gb|CF196145.1|CF196145
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACNNNNNATGAACATTGEST: gi|58656016|gb|CK044696.1|CK044696
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|29668686|gb|CB664961.1|CB664961
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGEST: gi|14981678|gb|BI306356.1|BI306356
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTG
EST: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTG AGATCCGAATTGCNCAGAATTT-CAACACCTATGGACCTANGATGAACATT
genomic: GCGTGTCGCAGAAACACTGATGTTTGACTATCACAGGCAGCATGGCATTGgtaatatttt ... atctctgtagAGATCCGAATTGC-CAGGATTTTCAACACCTATGGACCTAGGATGAACATT
tgatgtactggattgtagttctccttaataagtattttccaatctatctctgtagAGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACG
ccttaat putative branch site (score: 4)
tctatctct putative PPT
ttaataagtatttt TA-rich tract