1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtagtgctcttttacgtaagtgtgctggctgagcgcctttgagattcttgtcttctgtacttacactgaaaaacaatgtattgtttgaatgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG
species | Oryza sativa |
transcript | LOC_Os03g15780.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|29616792|gb|CB621804.1|CB621804
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: CATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|29616044|gb|CB621056.1|CB621056
genomic: CATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|29662736|gb|CB659011.1|CB659011
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|29646546|gb|CB651553.1|CB651553
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|29662735|gb|CB659010.1|CB659010
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|25803679|gb|CA759640.1|CA759640
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGANCCEST: gi|29628879|gb|CB633890.1|CB633890
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCEST: gi|29614551|gb|CB619564.1|CB619564
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
EST: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACG GTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
genomic: AATTAATGAACATTGAACGCTACTCCCATGTCATGCACATCAGTTCCACGgttaggctct ... tgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCC
ttcttgtcttctgtacttacactgaaaaacaatgtattgtttgaatgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG
tacttac putative branch site (score: 1)
aaaaacaatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagtgctcttttacgtaagtgtgctggctgagcgcctttgagattcttgtcttctgtacttacactgaaaaacaatgtattgtttgaatgatttacagGTGAGTGGAGAGTTGGATGATCATCTCCAAAGTTGGGATGCCCTGCGAGCCGCGTTGCCTGTTGGAACAGTTAGTGGAGCACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA