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...ttgcacaaaatctgtttgaacattgaagcttgatcattcattagaaaaatattttttctctgttgagctactgatatgatagagcaacgacaatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTG
species | Oryza sativa |
transcript | LOC_Os03g14990.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGATTCGATTGGTGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGT GGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTEST: gi|58587366|gb|CF985674.1|CF985674
genomic: GTGATTCGATTGGTGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtattt ... caatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCT
EST: GTGATTCGATTGGTGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGT GGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTEST: gi|218490820|gb|FG955462.1|FG955462
genomic: GTGATTCGATTGGTGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtattt ... caatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCT
EST: GTGATTCGATTGGTGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGT GGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTEST: gi|33674921|gb|CF303160.1|CF303160
genomic: GTGATTCGATTGGTGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtattt ... caatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCT
EST: TGATTCGATTGGTGGGTGTGGTCACATGCATTGCAAGAAATGTTCCTCGT GGGATTGGCGCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCT
genomic: TGATTCGATTGGTGG-TGTGGTCACATGCATTGCAAGAAATGTTCCTCGTgtaagtattt ... caatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCT
aaaatattttttctctgttgagctactgatatgatagagcaacgacaatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTG
tactgat putative branch site (score: 79)
attttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcacaaaatctgtttgaacattgaagcttgatcattcattagaaaaatattttttctctgttgagctactgatatgatagagcaacgacaatttgtagGGGATTGGCTCTCCTGTATTTGACAAACTTGAGGCTGAATTGGCGAAAGCTATGCTTTCTCTTCCTGCAAGCAAGGGGTTTGAGATCGGCAGTGGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- gcacaaa
- - - - - -ctgtttg
- - - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctactg