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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG

Basic information

species Oryza sativa
transcript LOC_Os03g13970.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G078663_T03 (Zea mays), 3'ss of exon 2
gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgc-gtatgactgactc-ttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
||| |||||  | |  ||| |||| ||| |   |      | |||||   ||| |  | | | | |  |||    |||      | ||||   |||| ||||||||||| |||||||| || ||| | |||||||||||||||||||||||  | ||||| |||
gtatgtattattcttaaactaatggcatacaggt------acattttagctgcagcttcaataatttattggcccttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTATTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G165926_T02 (Zea mays), 3'ss of exon 8
gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgt-atgactgactcttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
||| |||||  | |  ||| |||||||| |  || || |  | |   | |||| | || | |   |    |  ||||      | ||||  ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||| |||||  | ||||| |||
gtatgtattattattaaactaatgacatac--atgtacatttttagccgttgctttattaatttattggaccttttttatgtgtgaaataatagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCGTTGCACAGCCAGGGAGAG

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G147671_T01 (Zea mays), 3'ss of exon 8
gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
||| |||||  | |  ||| |||| ||| |   |  ||   ||  | ||      || | | | |   ||  ||||      | ||||   |||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||||| |||
gtatgtattattcttaaactaatggcatacaggtgcattt-tagctgcagcttcaataatttatt--ggccctttttatgtgtaaaataacagCTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 8
gtaagtatttgtttagaaccaatgacatgctaat---ctatagatattttcattgcgta--tgac----tgactcttgctgttt--tcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
    |||| | | || | ||| | |  |    ||   || || || | || || |  |   ||||    ||    |  |||  |  |   | ||     || |||| ||||| |||||||| |||||||| ||||| |||||||||||||| ||  ||||    |||   |||
----gtatgtctataaatccagtaaattttccatgttctttaaatgtattaatagaatgattgacaatatgttcttaactgaataatattcattgcttctgcagCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 8
gtaagtatttgtttagaaccaatgacatgctaatctatagatattttcattgcgta--tgac----tgactcttgctgttt--tcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
||| || | |   |  |   ||||    | |  ||| || || | || || |  |   ||||    ||       |||  |  |   | ||     || |||| ||||| |||||||| ||||| || ||||| |||||||||||||| || |||||    |||   |||
gtatgtctataaatccagtaaatgttccg-tgttctttaaatgtattgatagaatgattgacaatatgttctgcactgaataatattcgttgcttctgcagCTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAG

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 8
--gtaagtatttgttt--agaaccaatgacatgctaatctatagatattttcattgcgtatgactgactcttgctgttttcccccttcaaat-tgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
   |   || |   ||  |  |  | |    |  |  | |  | |||  || ||    | |   |    |     |   |    | |    | || |||| ||||| |||||||| |||||||| ||||| || ||||||||||| ||  ||||    |||   |||
gtatgcctaataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCCATGCAAAATCAGTCTGAG

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA01G36990.1 (Glycine max), 3'ss of exon 8
------------------gtaagtatttgtt---tagaaccaatgacatgctaatctatag-atattttcattgcgtatgactgactcttgctgttttcccccttcaaa----------------ttgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
                   | | ||||||||   |  |||      |||| | || | |    |  ||| |        || |||       | ||||   |  | |                  ||| |||| ||||| |||||||| |||||||| ||||| || ||||||||||| ||  ||||    |||   |||
gtatgtctaataaatcccatgattatttgttatgttaaacattccccatgattatttgttttgttcttttaacatagtagattgatctgctgtattttatgcactaagtgataattggtgggtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCCATGCAAAATCAGTCTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88845879|gb|CI084609.1|CI084609
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86431099|gb|CI083522.1|CI083522
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86255506|gb|CI065183.1|CI065183
EST:     GTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|218485696|gb|FG969920.1|FG969920
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTTCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89187364|gb|CI047431.1|CI047431
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86435975|gb|CI107208.1|CI107208
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86428998|gb|CI075679.1|CI075679
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88831185|gb|CI081995.1|CI081995
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|33654151|gb|CF276765.1|CF276765
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88902442|gb|CI087980.1|CI087980
EST:     AAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: AAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88262630|gb|CI366404.1|CI366404
EST:     AGATCAGTTGTGACATCCATCCTTAACTCT                         CTCCCTGGTGGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
genomic: AGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGT-GTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATC
EST: gi|86538942|gb|CI179148.1|CI179148
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAGAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86478545|gb|CI121178.1|CI121178
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|94362977|gb|CI053138.1|CI053138
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88203319|gb|CI203168.1|CI203168
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTCACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88437840|gb|CI533797.1|CI533797
EST:     CATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: CATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86512255|gb|CI154888.1|CI154888
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88219664|gb|CI219224.1|CI219224
EST:     ATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: ATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88842826|gb|CI371726.1|CI371726
EST:     TTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGCCATCA
genomic: TTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86512727|gb|CI155360.1|CI155360
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88344598|gb|CI637207.1|CI637207
EST:     TGAGCAAGGTGTTTGAAGANAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGGTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88841547|gb|CI080803.1|CI080803
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86414186|gb|CI068589.1|CI068589
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88997551|gb|CI390217.1|CI390217
EST:     TGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|218483651|gb|FG955547.1|FG955547
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86259614|gb|CI065487.1|CI065487
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29673812|gb|CB670087.1|CB670087
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89192813|gb|CI050111.1|CI050111
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCCATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|24468801|gb|CA305750.1|CA305750
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88273807|gb|CI394213.1|CI394213
EST:     GTTTGAAGACAGATCATGTGTGACATCCATCC-TAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: GTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86435819|gb|CI107052.1|CI107052
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29686951|gb|CB683226.1|CB683226
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88960606|gb|CI006567.1|CI006567
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86255672|gb|CI066735.1|CI066735
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86492426|gb|CI135059.1|CI135059
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|29638893|gb|CB643902.1|CB643902
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|86840416|gb|CI342593.1|CI342593
EST:     TGAGCAAGTTGTTTGAAGACAGATCAGTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89167578|gb|CI108979.1|CI108979
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCTATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|89185635|gb|CI047504.1|CI047504
EST:     TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCTATCCTTAACTCT                         CTCCCTGGTGTTGACCCCCATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: TGAGCAAGGTGTTTGAAGACAGATCATTTGTTACATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
EST: gi|88265231|gb|CI369005.1|CI369005
EST:     CATCCATCCTTAACTCT                         CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA
genomic: CATCCATCCTTAACTCTgtaagtattt ... caaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatattttcattgcgtatgactgactcttgctgttttcccccttcaaattgtagCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAG
                   gactgac  putative branch site (score: 2)
                         ctcttgctgttttccc  CT-rich tract
     ttttcatt  TA-rich tract