1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcatttcacttggatgctggtggatcaaattatcttaaaattcatctgttattaccaatgatttaatgttcaaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAGGGAGA
species | Oryza sativa |
transcript | LOC_Os03g10190.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|88971761|gb|CI388998.1|CI388998
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: TTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|88267710|gb|CI379645.1|CI379645
genomic: TTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: TTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|27554187|gb|CA998087.1|CA998087
genomic: TTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|88529723|gb|CI458063.1|CI458063
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: TGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|29678009|gb|CB674284.1|CB674284
genomic: TGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|86260015|gb|CI065888.1|CI065888
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAGGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTEST: gi|86599895|gb|CI256057.1|CI256057
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
EST: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAG AATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
genomic: GCACAGATTTTCAAGCAAGGAGACTTGGTATAGGTTATGGCCAGAAAAAGgtatcatttc ... caaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACT
caaattatcttaaaattcatctgttattaccaatgatttaatgttcaaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAGGGAGA
atttaat putative branch site (score: 22)
atttaatgttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcatttcacttggatgctggtggatcaaattatcttaaaattcatctgttattaccaatgatttaatgttcaaattgcagAATGACGAACAATCCAAGCAATTTGTTCATATGTTGAACTCAACATTGACTGCCACTGAGAGGACCCTTTGCTGTATTTTGGAGAACTTCCAGAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA