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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgcattatgtttatgaagactggatactatgtactgcatatttattttagatttgtgtcaccagatgttttcgcacccttttgttgttatgatgtgcagAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCT

Basic information

species Oryza sativa
transcript LOC_Os03g09920.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g09920.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G114758_T01 (Zea mays), 3'ss of exon 8
ctgcattatgtttatgaagactggatactatgtactgcatatttattttagat-ttgtgtcaccagat---gttttcgcacccttttgttgttatgatgtgcagAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCT
    | |    || |  || ||| ||||    |||| |||||    | |  |  || |||    || |   ||||||  ||| ||  ||| | |  || |||||||| || || ||||||||||| ||||||||||||||  | ||||| |||||||||||||| || ||||| ||||||||||| | |||||||||| |||||
----agttaaattgtcgagcctgtatacatcctacttcatatgccctgttcacattatgtatttaggtcaggttttcatacctttccgttctaacaatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAATGTGCAGAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87007319|gb|CI278990.1|CI278990
EST:     AAATTCAAGTGGTGTCACTCGTTCTTGTCAGTTAACAG                         AGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAA
genomic: AAATTCAAGTGGGGTCACTCGTTCTTGTCAGTTAACAGgttagttcag ... tgatgtgcagAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagatttgtgtcaccagatgttttcgcacccttttgttgttatgatgtgcagAGAGCTGCTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCT
                    atgtttt  TA-rich tract