1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cagtactgtcgcatcttggttccttaattttcctttgttcagtaatctcgtagctaatatgagtttattttaatatgatatgatgtgttgtcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
species | Oryza sativa |
transcript | LOC_Os03g07600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGG GAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAGEST: gi|86498725|gb|CI141358.1|CI141358
genomic: GCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGGgtaagatctc ... tcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
EST: GCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGG GAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAGEST: gi|89167030|gb|CI104316.1|CI104316
genomic: GCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGGgtaagatctc ... tcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
EST: TCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGG GAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAGEST: gi|86500021|gb|CI142654.1|CI142654
genomic: TCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGGgtaagatctc ... tcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
EST: GCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGG GAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
genomic: GCTATGTTAGCTCAAAGGATAACCTCATAATACTAATGAACCTTTTAAGGgtaagatctc ... tcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
tctcgtagctaatatgagtttattttaatatgatatgatgtgttgtcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
ttttaat putative branch site (score: 8)
taatatgagtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtactgtcgcatcttggttccttaattttcctttgttcagtaatctcgtagctaatatgagtttattttaatatgatatgatgtgttgtcattaccagGAGCAAAGCAGGGCCATTCAAGTTGAGGCTTTTCGCGTTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - -ctgtcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt