1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attgtgttcgttagcatatttaaaaaaccactaaacagattcatccttgtatattaatcattcatcatttgattatatatttatgttttccctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG
species | Oryza sativa |
transcript | LOC_Os03g05720.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGEST: gi|29634108|gb|CB639117.1|CB639117
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
EST: TGAATGTAGTTTCCAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTTTTACTTAAAGGAGTGGEST: gi|7332525|gb|AU085871.1|AU085871
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
EST: TGAATGTAGTTTC-AATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGEST: gi|218485889|gb|FG950181.1|FG950181
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
EST: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGEST: gi|218482933|gb|FG946915.1|FG946915
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
EST: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAEST: gi|218478499|gb|FG957068.1|FG957068
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAA
EST: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGEST: gi|33803449|gb|CF327599.1|CF327599
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
EST: TGAATGTAGTTT-AAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGEST: gi|218482633|gb|FG949654.1|FG949654
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
EST: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTT TCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
genomic: TGAATGTAGTTTCAAATGTTCGTCCAAATGACTTGGAACAGGCTCTCCTTgtaagttttt ... cctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGG
cttgtatattaatcattcatcatttgattatatatttatgttttccctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG
tttatgttttccct CT-rich tract
atattaatcattcatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtgttcgttagcatatttaaaaaaccactaaacagattcatccttgtatattaatcattcatcatttgattatatatttatgttttccctgcaacagTCATTGCCATTCTCAGATGCACTTAAGATCATGTCTTACTTAAAGGAGTGGTCTATGGTTCCTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-ttgtgtt
- - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - cactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt