1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggaacgtcaaatatcaggaaccttctggtgttacaaaaaaatcgttagattgaagttatctcactcctttacctcctctttgggttgcagTTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGCTTATGCCACCTCATGTCTGACCAACCTGATGCTGCCCTCCGGGATGCAA
species | Oryza sativa |
transcript | LOC_Os03g04050.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAG TTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGCEST: gi|218502914|gb|FG966857.1|FG966857
genomic: TTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAGgttggaacgt ... tgggttgcagTTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGC
EST: TTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAG TTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAAACGGAGCEST: gi|29672737|gb|CB669012.1|CB669012
genomic: TTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAGgttggaacgt ... tgggttgcagTTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGC
EST: TTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAG TTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGC
genomic: TTGCGTTTCGTGATAAAGATTTTAAGACAGCCATAGAGTGTTACACACAGgttggaacgt ... tgggttgcagTTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGC
aaaaaatcgttagattgaagttatctcactcctttacctcctctttgggttgcagTTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGCTTATGCCACCTCATGTCTGACCAACCTGATGCTGCCCTCCGGGATGCAA
atctcac putative branch site (score: 12)
ttatctcactccttta CT-rich tract
ttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggaacgtcaaatatcaggaaccttctggtgttacaaaaaaatcgttagattgaagttatctcactcctttacctcctctttgggttgcagTTTGTTGATGTGGGAACAATGGTATCACCAACGGTATACGCTAGACGGAGCTTATGCCACCTCATGTCTGACCAACCTGATGCTGCCCTCCGGGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC