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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgtagtcatttgcacttgaaaatacttaggtggattttttgtggaataatttattgaatggtgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT

Basic information

species Oryza sativa
transcript LOC_Os03g01150.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01150.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G374779_T03 (Zea mays), 3'ss of exon 8
gttcgtgtagtcatttgcacttgaaaatacttaggtggattttttgtggaataatttattgaatggtgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
      |||  || ||    ||     |  |||     |  |   | |  |||| ||   | |||||||||| |||| |||||||||||||||||| ||| | ||||||||||||
------gtaaacacttt--attatttttttttaaaaaaaaatcacgcg--ataacttgaggcatggtgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT

upper sequence: LOC_Os03g01150.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G374779_T02 (Zea mays), 3'ss of exon 7
--------------------------------gttcgtgtagtcatttgcacttgaaaatacttaggtggatttt--ttgtggaataatttattgaatggtgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
                                 ||  |||  |  |   ||||| |  ||  ||   |  |      |   |  |||| ||   | |||||||||| |||| |||||||||||||||||| ||| | ||||||||||||
gtttgaatgcattggcttaaatcgaacttgatttttttgtcatggtaaacactttattatttttttttaaaaaaaaatcacgcgataacttgaggcatggtgaattacagGAACATCTTGCACCTAGTGGCTACCTCAAAATCCCAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29619263|gb|CB624275.1|CB624275
EST:     TTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAG                         GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
genomic: TTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGgttcgtgtag ... tgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
EST: gi|29661632|gb|CB657907.1|CB657907
EST:     TTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAG                         GCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
genomic: TTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGgttcgtgtag ... tgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
EST: gi|58585728|gb|CF984036.1|CF984036
EST:     TTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAG                         GCGCGTCTTGCACCTAGTGGTTACATGAAAATCCCAACT
genomic: TTCTTGCTGATTCCCTGATTAAAATGGAGATCTACTCAGACTATGTCCAGgttcgtgtag ... tgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaatacttaggtggattttttgtggaataatttattgaatggtgaattgcagGCACATCTTGCACCTAGTGGTTACATGAAAATCCCAACT
                 attttttgtggaataa  TA-rich tract