1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtgttaatagtagaggcatctataacaaacccacgaacttaaatttgtttctatgtttcctgctagctgtgcaatgagactttactcctactgttacagAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAG
species | Oryza sativa |
transcript | LOC_Os02g54580.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAG AAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATEST: gi|58652918|gb|CK041598.1|CK041598
genomic: TCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGgtaagaataa ... actgttacagAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTAT
EST: AAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAG AAGTGATGATCCATGCCCTTACACAAGTT-CCTGGGGAACGTGTTGATGTAEST: gi|29629784|gb|CB634793.1|CB634793
genomic: AAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGgtaagaataa ... actgttacagAAGTGATGATCCATGGCCTTACACAAGTTCCCT-GGGAACGTGTTGATGTA
EST: TCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAG AAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTAT
genomic: TCATCAGCAAGAGGAATCTGTAGAAGCTTCACTTACAGATAGCATGGAAGgtaagaataa ... actgttacagAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTAT
ttgtttctatgtttcctgctagctgtgcaatgagactttactcctactgttacagAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAG
ctcctact CT-rich tract
tatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgttaatagtagaggcatctataacaaacccacgaacttaaatttgtttctatgtttcctgctagctgtgcaatgagactttactcctactgttacagAAGTGATGATCCATGGCCTTACACAAGTTCCCTGGGAACGTGTTGATGTATGCTTTCATAAGAGCTGGCTAAGATACAATGCCCACCACAATATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaatg