1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgcatatcatactgtgtagctatttatctttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAAGGTAGAATTTGGCTTACCTGACCTGGAGGGCCGTACCCAAATATTCAAG
species | Oryza sativa |
transcript | LOC_Os02g54340.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAG GCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAAEST: gi|58654487|gb|CK043167.1|CK043167
genomic: GATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcata ... gttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAA
EST: GATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAG GCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAAEST: gi|8857968|gb|AU095286.1|AU095286
genomic: GATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcata ... gttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAA
EST: GATGGGTTTGATGCGAAGGGAA-CATCAAGGTTCTGATGGCCACCAACAA GCCTGAAACCTTAGATC-TGCACTTCTACGTCCTGGTCGTTTGEST: gi|29684845|gb|CB681120.1|CB681120
genomic: GATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcata ... gttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTG
EST: GATGGGTTTGATGCGAGGGGAAACATCAAGGTTTTGATGGCCACAAACAG GCCTGATACCTTAGATCCTGCACTTTTACGTCCTGGTCGTTTGGACAGGAA
genomic: GATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcata ... gttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAA
actatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAAGGTAGAATTTGGCTTACCTGACCTGGAGGGCCGTACCCAAATATTCAAG
agctgac putative branch site (score: 3)
ttttcttgttttgtc putative PPT
attttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcatatcatactgtgtagctatttatctttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcagGCCTGATACCTTAGATCCTGCACTTCTACGTCCTGGTCGTTTGGACAGGAAGGTAGAATTTGGCTTACCTGACCTGGAGGGCCGTACCCAAATATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG