1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttctattttttaacctgaatattggatgcatcctataccatagctcttcttggtaccaactcttgtttcaattttaagttctattgttctattcatgtagGCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTATGATAGACTACTTTCAACATTTGGTAGTGAAGACATACCAGCTTGCGGCT
species | Oryza sativa |
transcript | LOC_Os02g51830.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGCATCTGTTGTTCGTGGCCTTGCATACTACACAGGAATTGTTTTTGAG GCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTATEST: gi|8404516|gb|AU091870.1|AU091870
genomic: ATGCATCTGTTGTTCGTGGCCTTGCATACTACACAGGAATTGTTTTTGAGgttgttgttg ... attcatgtagGCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTAT
EST: TCTGTTGTTCGTGGCCTTGCATACTACACAGGAATTGTTTTTGAG GCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTAT
genomic: TCTGTTGTTCGTGGCCTTGCATACTACACAGGAATTGTTTTTGAGgttgttgttg ... attcatgtagGCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTAT
cttcttggtaccaactcttgtttcaattttaagttctattgttctattcatgtagGCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTATGATAGACTACTTTCAACATTTGGTAGTGAAGACATACCAGCTTGCGGCT
ttctattc CT-rich tract
aattttaagttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctattttttaacctgaatattggatgcatcctataccatagctcttcttggtaccaactcttgtttcaattttaagttctattgttctattcatgtagGCTTTTGATAGAGATGGAAAACTGAGAGCAATTTGTGGTGGAGGAAGGTATGATAGACTACTTTCAACATTTGGTAGTGAAGACATACCAGCTTGCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - acctgaa
- - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - -cttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct