1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atccaacatcagtatacggagatcaaaaccaatggaatgctttggatgttttagtttctgtactctggtctcacaattcattgttattttggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATCCTAATGGTTTACTAATTGACGCCAATTCAGGAAAG
species | Oryza sativa |
transcript | LOC_Os02g48964.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGA-GTTTCAGCTCTACAACCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGNGATGATEST: gi|218482014|gb|FG963446.1|FG963446
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|29677180|gb|CB673455.1|CB673455
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|29671103|gb|CB667378.1|CB667378
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|163922839|gb|EG712235.1|EG712235
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|218488856|gb|FG965224.1|FG965224
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|25801428|gb|CA757389.1|CA757389
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|58685293|gb|CK073980.1|CK073980
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: GGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|86868119|gb|CI331871.1|CI331871
genomic: GGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: GGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|218501212|gb|FG955432.1|FG955432
genomic: GGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|86479527|gb|CI122160.1|CI122160
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|27548190|gb|CA766256.2|CA766256
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|29619649|gb|CB624661.1|CB624661
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: AGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|29619648|gb|CB624660.1|CB624660
genomic: AGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|29672639|gb|CB668914.1|CB668914
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|2797334|gb|AA750628.1|AA750628
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: GGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|218495836|gb|FG960244.1|FG960244
genomic: GGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|29679291|gb|CB675566.1|CB675566
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATEST: gi|86862373|gb|CI345493.1|CI345493
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
EST: TGGAGA-GTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCAGTTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAEST: gi|29674117|gb|CB670392.1|CB670392
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCA-TTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGA
EST: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAAT CATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
genomic: TGGAGAGGTTTCAGCTCTACAAGCATTTTCAGTTTGAATGGCCAGTGAATgtaagtcttt ... ggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGAT
atgttttagtttctgtactctggtctcacaattcattgttattttggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATCCTAATGGTTTACTAATTGACGCCAATTCAGGAAAG
gtctcac putative branch site (score: 59)
aattcattgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccaacatcagtatacggagatcaaaaccaatggaatgctttggatgttttagtttctgtactctggtctcacaattcattgttattttggtgatgcagCATACAGCATTGAGTCCTGACAGAAAGCTTGCTGTTATTGTGGGGGATGATCCTAATGGTTTACTAATTGACGCCAATTCAGGAAAG
- - aacatca
- - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - -ggaatgc
- - - - - - - - - - - - - - - - - - - - -ttggatg