1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagtgttggtttggtccctttctcttttttgaaacacttcagatgaatctcatatctaaacattagcttccttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGTCATATGGATGCAAGATAACTGTTGTTCCAGCCAATTGGCCTGCTTCTG
species | Oryza sativa |
transcript | LOC_Os02g47850.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAG-TTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|29626834|gb|CB631845.1|CB631845
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|29682715|gb|CB678990.1|CB678990
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|66913870|gb|CX100718.1|CX100718
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|27547697|gb|CA765722.2|CA765722
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|58689196|gb|CK077883.1|CK077883
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|218483317|gb|FG958109.1|FG958109
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGEST: gi|29677260|gb|CB673535.1|CB673535
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
EST: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCAT GTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
genomic: CTGATTCAGAGTGGGAATTCAAGAAGGGTCAATCGACTGAAAGTTTTCATgtcagtgttg ... ttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACG
ttttgaaacacttcagatgaatctcatatctaaacattagcttccttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGTCATATGGATGCAAGATAACTGTTGTTCCAGCCAATTGGCCTGCTTCTG
atctaaa putative branch site (score: 3)
cttccttttattt putative PPT
atatctaaacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgttggtttggtccctttctcttttttgaaacacttcagatgaatctcatatctaaacattagcttccttttatttagGTGGTCGCATACGATTTTGGAATCAAGCACAATATTTTGAGACGTTTGACGTCATATGGATGCAAGATAACTGTTGTTCCAGCCAATTGGCCTGCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA