1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagttttgcttgttaattcttcagcaaaacctgatgttcattctttatcctgtcgtcttcacaatcaatccactgactaaactatcaattgttacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCTGATCAACTGCAGAGGCTACATGATTCACTGAACAGTTTCTCATCAATA
species | Oryza sativa |
transcript | LOC_Os02g47600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|163918159|gb|EG715273.1|EG715273
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTTTACGGCGCCTACATCATTGEST: gi|88489212|gb|CI426484.1|CI426484
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTG
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTTTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88417720|gb|CI535879.1|CI535879
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|33823831|gb|CF337722.1|CF337722
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88547325|gb|CI477611.1|CI477611
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88516433|gb|CI444087.1|CI444087
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88563705|gb|CI494422.1|CI494422
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTGTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|8404630|gb|AU091984.1|AU091984
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|16753343|gb|BM037722.1|BM037722
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|15852955|gb|BI805751.1|BI805751
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88277921|gb|CI398723.1|CI398723
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACNGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|8858737|gb|AU096055.1|AU096055
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88252098|gb|CI350526.1|CI350526
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTTTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|33663640|gb|CF294607.1|CF294607
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88503068|gb|CI430574.1|CI430574
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|58689221|gb|CK077908.1|CK077908
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|40487599|gb|BX898545.1|BX898545
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|15008285|gb|AU222673.1|AU222673
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTTTACGGNGCCTACATCATTGAGAGCTTGAGGAAGTGATNTCCAGCEST: gi|88320378|gb|CI523121.1|CI523121
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88436805|gb|CI521556.1|CI521556
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTTTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|33662651|gb|CF293618.1|CF293618
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88439037|gb|CI531217.1|CI531217
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88291649|gb|CI537435.1|CI537435
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88663480|gb|CI482372.1|CI482372
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88988638|gb|CI039057.1|CI039057
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|8404547|gb|AU091901.1|AU091901
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATNCCATCAACGCAATCAAGTACTCAAT GGCCCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|163928605|gb|EG710890.1|EG710890
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88470644|gb|CI407915.1|CI407915
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88250322|gb|CI348552.1|CI348552
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88256927|gb|CI354708.1|CI354708
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88663129|gb|CI476747.1|CI476747
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTGTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88468348|gb|CI512363.1|CI512363
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AGATGCCATCAACGCAATCAAGTACTCAAT GGACCTTTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88984805|gb|CI009553.1|CI009553
genomic: AGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88478376|gb|CI415647.1|CI415647
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|58596788|gb|CK007316.1|CK007316
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88256729|gb|CI359117.1|CI359117
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|86907564|gb|CI296569.1|CI296569
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88277299|gb|CI398101.1|CI398101
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: TGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|88490240|gb|CI427512.1|CI427512
genomic: TGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCEST: gi|86251686|gb|CI018283.1|CI018283
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
EST: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAAT GGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
genomic: AATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATgtgagttttg ... tacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGC
tcctgtcgtcttcacaatcaatccactgactaaactatcaattgttacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCTGATCAACTGCAGAGGCTACATGATTCACTGAACAGTTTCTCATCAATA
gactaaa putative branch site (score: 33)
taaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttgcttgttaattcttcagcaaaacctgatgttcattctttatcctgtcgtcttcacaatcaatccactgactaaactatcaattgttacaccacagGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGATCTCCAGCTGATCAACTGCAGAGGCTACATGATTCACTGAACAGTTTCTCATCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG