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gtacggtcatttccgcaccatattggccatgctattgaatttaggttcttatacaagtactcaaattattaagcaacatatgtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTCACATCCTATGAGTTCCTCAAAACAATTATGTTTTCTGAACAAGAGCTT
species | Oryza sativa |
transcript | LOC_Os02g44570.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATGCGCTCAAAGAAATTTTTCAGCACGAAGGCTTGCAGGGTCTTTACAG GGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTEST: gi|86874416|gb|CI316782.1|CI316782
genomic: CATGCGCTCAAAGAAATTTTTCAGCACGAAGGCTTGCAGGGTCTTTACAGgtacggtcat ... gtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTT
EST: CATGCGCTCAAAGAAATTTTTCAGCACGAAGGCTTGCAGGGTCTTTACAG GGGTTT-GCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTEST: gi|88969324|gb|CI382872.1|CI382872
genomic: CATGCGCTCAAAGAAATTTTTCAGCACGAAGGCTTGCAGGGTCTTTACAGgtacggtcat ... gtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTT
EST: ACGAAGGCTTGCAGGGTCTTTACAG GGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTEST: gi|86874415|gb|CI316781.1|CI316781
genomic: ACGAAGGCTTGCAGGGTCTTTACAGgtacggtcat ... gtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTT
EST: CATGCGCTCAAA-AAATTTTTCAGCAC-AAGGC-TGCAGGGTCTTTACA- GGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTT
genomic: CATGCGCTCAAAGAAATTTTTCAGCACGAAGGCTTGCAGGGTCTTTACAGgtacggtcat ... gtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTT
gaatttaggttcttatacaagtactcaaattattaagcaacatatgtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTCACATCCTATGAGTTCCTCAAAACAATTATGTTTTCTGAACAAGAGCTT
tatttcc CT-rich tract
tactcaaattattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggtcatttccgcaccatattggccatgctattgaatttaggttcttatacaagtactcaaattattaagcaacatatgtatttccagGGGTTTGGCTCCAAGGTTGGCTATGTATATATCTCAAGGGGCTATATTTTTCACATCCTATGAGTTCCTCAAAACAATTATGTTTTCTGAACAAGAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT