1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtctgtttcttatttagttgcaaacatatccttgaaactctaaacaacatttcctttaaaatcatttttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT
species | Oryza sativa |
transcript | LOC_Os02g44510.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|88337938|gb|CI676916.1|CI676916
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|88422253|gb|CI689057.1|CI689057
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|58654435|gb|CK043115.1|CK043115
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|88590027|gb|CI708851.1|CI708851
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCCTTTTGAAGTGGGCTTCTAGTTTCATEST: gi|88592646|gb|CI710765.1|CI710765
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACC-TTTTGAAGTGGGCTTCTAGTTTCAT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|29624544|gb|CB629555.1|CB629555
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|58695325|gb|CK084012.1|CK084012
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGEST: gi|33794022|gb|CF322901.1|CF322901
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTG
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|88414347|gb|CI691507.1|CI691507
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTEST: gi|58689586|gb|CK078273.1|CK078273
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
EST: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATG GATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
genomic: ACGAGGACTTGCTAAATGCTGATGATGACAACCACTTCCAGGAAAAGATGgtctgtttct ... tttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATT
aaacatatccttgaaactctaaacaacatttcctttaaaatcatttttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT
ttttaat putative branch site (score: 34)
tcattttt CT-rich tract
aacatttcctttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtttcttatttagttgcaaacatatccttgaaactctaaacaacatttcctttaaaatcatttttaatgcagGATAACAAAGGCTGGAATAACAACCTTTTGAAGTGGGCTTCTAGTTTCATTAGTGGCGACTCATCATCAAAAAAGAAGGATGAGAAAATCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG