1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgaatgtttagctgaaccacaactgtcatttactcatttaatgcccattcaaattattgtgggacttctgcatacttgataacttgccgcgattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTTATGGCATCTGTGAG
species | Oryza sativa |
transcript | LOC_Os02g39570.6 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTNATCACACTGTTACGTTACAN CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88539198|gb|CI468290.1|CI468290
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: ATGTTTCTGATCACAGCTGTTACGTTACAG CTTACT-GGGATTCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCEST: gi|29676546|gb|CB672821.1|CB672821
genomic: ATGTTTCTGATCACA-CTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGA-TCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88538414|gb|CI467440.1|CI467440
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: CACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGNTTGCATTACAAAGGCTNTTGGAGCCTEST: gi|88512954|gb|CI440460.1|CI440460
genomic: CACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: CTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAANATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88284518|gb|CI405964.1|CI405964
genomic: CTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGGTGATGTTTCTGATCACACTNTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|29656805|gb|CB653080.1|CB653080
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88832223|gb|CI017457.1|CI017457
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|15853702|gb|BI806498.1|BI806498
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88478672|gb|CI415943.1|CI415943
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: GGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88906495|gb|CI375567.1|CI375567
genomic: GGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCTGGCAAAATCGGTTGATGTTTCTGATCACACTGTTACGTTACAGG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCEST: gi|32948291|gb|BP184863.1|BP184863
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACA-Ggtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88508589|gb|CI436095.1|CI436095
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: AATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|32948361|gb|BP184933.1|BP184933
genomic: AATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCEST: gi|86522997|gb|CI163203.1|CI163203
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88481174|gb|CI418445.1|CI418445
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACNTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGGTGTTGGAGCCTEST: gi|33682201|gb|CF310440.1|CF310440
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88502715|gb|CI430221.1|CI430221
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88552259|gb|CI480930.1|CI480930
genomic: TGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|87021293|gb|CI295352.1|CI295352
genomic: TTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88273463|gb|CI393869.1|CI393869
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: CTTCCGGGCGAAATCTGGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTEST: gi|88513717|gb|CI441223.1|CI441223
genomic: CTTCCGGGCAAAATCT-GTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: TCTGTTGATGTTTCTGATCACACTGTTACGTTACAG CTTACTGGGGATCTCGACAAGATGGTTNCATTACAAAGGCTGTTGGAGCCT
genomic: TCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
cattcaaattattgtgggacttctgcatacttgataacttgccgcgattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTTATGGCATCTGTGAG
tgataac putative branch site (score: 2)
aaattattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgtttagctgaaccacaactgtcatttactcatttaatgcccattcaaattattgtgggacttctgcatacttgataacttgccgcgattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCTTATGGCATCTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG