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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttatgccactgccgtaccttaattgcacttgaaaattactctatactttgatcattgagagattattgttcagctatagtctggcattgaatgctgtggtttcacgtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAG

Basic information

species Oryza sativa
transcript LOC_Os02g38060.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38060.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G876003_T02 (Zea mays), 3'ss of exon 7
gtcagttatgccactgccgtaccttaattgcacttgaaaattactctatactttgatcattgagagattattgttcagctatagtctggcattgaatgctgtggtttcacgtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGT-AATTGTACTAG
                                   |  | || | || |  |||| |   |   || |   ||     ||  |   |     ||||| | |   |  || | |  |||||||||| ||||||||||  || | |||||||||||| ||| ||||||| ||||||||||||||||||||| |   |    |  || |    | |  ||||  
-----------------------------------gttagtttcacttt--tttgctaccttgaagctacctggatcacttgaccttcatgctgaatccggct-taccatgcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGCTTGTACAAACGGCGATGAGCCGCTTGTCTCGTATCCACCAGTAATACTG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88240834|gb|CI238685.1|CI238685
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|86541932|gb|CI182138.1|CI182138
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|88215537|gb|CI215386.1|CI215386
EST:     GATGCGAAAAACGAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|88508457|gb|CI435963.1|CI435963
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCCAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
EST: gi|27547869|gb|CA765880.2|CA765880
EST:     GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAG                         GAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC
genomic: GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatg ... gtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattattgttcagctatagtctggcattgaatgctgtggtttcacgtctttgcagGAAAAGAGTAAGGTGGTCAAAAACATCGATTGGCCTCAGTTGAAACCTTGCTTGTACAAACGGCGATGATCTCATCCATTGATAACTGTAATTGTACTAG
                                            cgtcttt  CT-rich tract
                         attgaat  TA-rich tract