1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttgatgcttctgatcatgttcaggtcagattatctgtgaacatattattgccattactaatacattgcgctactgaattcctttggtcttttcagcagATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCAATTCTCAAAGCATACCTGCAAACGTCACTACACAATATGAGCGGAGTTC
species | Oryza sativa |
transcript | LOC_Os02g35470.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAAAAGCA-GGCAAACTTCTACAGGCACTACAAGTGAAGCAGEST: gi|33674902|gb|CF303141.1|CF303141
genomic: GCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTG-A--AGgtaatatgat ... ttttcagc
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG ATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCAEST: gi|29667009|gb|CB663284.1|CB663284
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcagATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCA
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG CEST: gi|29667009|gb|CB663284.1|CB663284
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcag-
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG CEST: gi|58607528|gb|CK035561.1|CK035561
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcag-
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG CEST: gi|58607528|gb|CK035561.1|CK035561
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcag-
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG CEST: gi|29666753|gb|CB663028.1|CB663028
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcag-
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGCAGEST: gi|29668182|gb|CB664457.1|CB664457
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTG-A--AGgtaatatgat ... ttttcagc
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG ATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCAEST: gi|3761547|gb|C98795.1|C98795
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcagATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCA
EST: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAG ATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCA
genomic: GTCTCAACCAGCAAAAGCAGGGCAAACTTCTACAGGCACTACAAGTGAAGgtaatatgat ... ttttcagcagATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCA
attattgccattactaatacattgcgctactgaattcctttggtcttttcagcagATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCAATTCTCAAAGCATACCTGCAAACGTCACTACACAATATGAGCGGAGTTC
tactaat putative branch site (score: 27)
ttcctttggtcttttc putative PPT
attactaatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgatgcttctgatcatgttcaggtcagattatctgtgaacatattattgccattactaatacattgcgctactgaattcctttggtcttttcagcagATGGATCTACAAGTGCATACAATGGAAATCAGGCAGGACGATATGCAGTCAATTCTCAAAGCATACCTGCAAACGTCACTACACAATATGAGCGGAGTTC
- -tgatgct
- - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - tgccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctactg