1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgtaacctatccctggtctttatttcttgataataaacaaaacaagggtagaactttgtggatgataaagaacatttacaatctggcatattttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGA
species | Oryza sativa |
transcript | LOC_Os02g35160.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|88831299|gb|CI082109.1|CI082109
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|88842138|gb|CI081394.1|CI081394
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|89171258|gb|CI109782.1|CI109782
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: AGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGTTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|58588169|gb|CF986477.1|CF986477
genomic: AGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGGGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|88295867|gb|CI532828.1|CI532828
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|58669317|gb|CK058003.1|CK058003
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|89173075|gb|CI040968.1|CI040968
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: CACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|88468179|gb|CI517638.1|CI517638
genomic: CACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: GTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|88843052|gb|CI371952.1|CI371952
genomic: GTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: CAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|29628424|gb|CB633435.1|CB633435
genomic: CAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCEST: gi|86842093|gb|CI338447.1|CI338447
genomic: TGAGCTGCAGAAGAAGTTTGCTTGCAGCACCACCACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
EST: CACAGCTGAGCTTCCAG GTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
genomic: CACAGCTGAGCTTCCAGgttgtaacct ... ttttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACC
gggtagaactttgtggatgataaagaacatttacaatctggcatattttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGA
tattttttcc CT-rich tract
ataaagaacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtaacctatccctggtctttatttcttgataataaacaaaacaagggtagaactttgtggatgataaagaacatttacaatctggcatattttttccagGTAAGAAAGGGCAACACGAGGTCTTGGTTCAAGGTGGAGTCATCGATGACCTTGCAAAGCACCTTGTTGATCATTACGGTGTTCCGAAGAGGTTTATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
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