1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagctgatattaaaattcacgtaatttccagcaagctcctaccttttttatgggtttgcatgacttgcttcacatcacacgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCTTTTCACAAGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGA
species | Oryza sativa |
transcript | LOC_Os02g33230.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCEST: gi|88985474|gb|CI002991.1|CI002991
genomic: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGGgtaagctgat ... cgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
EST: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCEST: gi|88906754|gb|CI375826.1|CI375826
genomic: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGGgtaagctgat ... cgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
EST: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCEST: gi|86501379|gb|CI144012.1|CI144012
genomic: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGGgtaagctgat ... cgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
EST: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCEST: gi|38472562|gb|CF956694.1|CF956694
genomic: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGGgtaagctgat ... cgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
EST: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCEST: gi|29677033|gb|CB673308.1|CB673308
genomic: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGGgtaagctgat ... cgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
EST: GTCGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGG GAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
genomic: GTTGTAACAGCTGATTCTATAAGTATGTTAAGTGAGGCTTGTAGCACAGGgtaagctgat ... cgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGC
gctcctaccttttttatgggtttgcatgacttgcttcacatcacacgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCTTTTCACAAGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGA
ttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgatattaaaattcacgtaatttccagcaagctcctaccttttttatgggtttgcatgacttgcttcacatcacacgtgtcacagGAAGCCTGTTTACGTCATTGGGACTGAGTATTGTAAATGGAAGTTTTCTGCTTTTCACAAGACTCTACGGGAGCGAGGAGTTGTCCGTCCTTTCACTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG