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gtaaagacaagttctttttttttttaaggagatggttatggcattttcatattttggggaactactccgagaaacttctatttcctcatacaatctttggcctgtgtgtgtgtctcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGTCCACTCCTGAATGGAGCAACAGTTCTCGTTTTTGAAGGG
species | Oryza sativa |
transcript | LOC_Os02g32490.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTAEST: gi|163918237|gb|EG715289.1|EG715289
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTA
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGAEST: gi|33793849|gb|CF322812.1|CF322812
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGA
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGEST: gi|58670796|gb|CK059482.1|CK059482
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGEST: gi|87005349|gb|CI285571.1|CI285571
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGEST: gi|58672412|gb|CK061098.1|CK061098
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGEST: gi|58686635|gb|CK075322.1|CK075322
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGEST: gi|58664753|gb|CK053439.1|CK053439
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGEST: gi|29682570|gb|CB678845.1|CB678845
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
EST: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTG GTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
genomic: GCAACAACATTTAAGTATGCATTTGATTACAAGCCGTCGGACATATACTGgtaaagacaa ... tcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGG
agaaacttctatttcctcatacaatctttggcctgtgtgtgtgtctcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGTCCACTCCTGAATGGAGCAACAGTTCTCGTTTTTGAAGGG
ttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagacaagttctttttttttttaaggagatggttatggcattttcatattttggggaactactccgagaaacttctatttcctcatacaatctttggcctgtgtgtgtgtctcaacatcagGTGCACTGCAGACTGTGGCTGGATTACTGGACACAGCTATGTGACGTATGGTCCACTCCTGAATGGAGCAACAGTTCTCGTTTTTGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG