1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcatattgctttgtgctgttcacctatttatgcccctacaagttttatttctgttctaatggttgccacttactttaagttgttctccttttttttttttttttttgcaaacttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT
species | Oryza sativa |
transcript | LOC_Os02g27360.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAG ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTAEST: gi|86493808|gb|CI136441.1|CI136441
genomic: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAGgtgcatattg ... ttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTA
EST: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAG ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTAEST: gi|88903097|gb|CI088635.1|CI088635
genomic: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAGgtgcatattg ... ttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTA
EST: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAG ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTAEST: gi|88246534|gb|CI246383.1|CI246383
genomic: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAGgtgcatattg ... ttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTA
EST: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAG ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTAEST: gi|88228038|gb|CI227518.1|CI227518
genomic: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAGgtgcatattg ... ttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTA
EST: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAG ATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTA
genomic: AAACGGTGGAGTACAAACCAAGGATGGGAAAGATATGGTGCTTTTGGGAGgtgcatattg ... ttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTA
acttactttaagttgttctccttttttttttttttttttgcaaacttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT
aacttac putative branch site (score: 2)
ttctcctttttttttt CT-rich tract
tttttttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatattgctttgtgctgttcacctatttatgcccctacaagttttatttctgttctaatggttgccacttactttaagttgttctccttttttttttttttttttgcaaacttactttcagATCTAGTGCTTTCAAATAAGCTGGTTCTTTATGATTTAGAAAATCAAGCTATCGGGTGGGCAGATTACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT