1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtatatattaatttgtattttgcaattttagtgtgataatcttgcttggttatgtaaatcaatataataattattcttttcaattatttattctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAAAGCGCAAGTTCTCAACTTATTCCCATCTGACTGACATGCTGTTGTCAA
species | Oryza sativa |
transcript | LOC_Os02g27340.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|3767804|gb|AU031831.1|AU031831
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: ACGCACTCGGCAAAGNGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCCAAAATTGAAGTGATGTACAGAGCTACEST: gi|87008481|gb|CI314939.1|CI314939
genomic: ACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCAT-CAAAATTGAAGTGATGTACAGAGCTAC
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|29664829|gb|CB661104.1|CB661104
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|86251723|gb|CI018915.1|CI018915
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|86500803|gb|CI143436.1|CI143436
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|86865991|gb|CI336765.1|CI336765
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: AAGAAGCTGGTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATT- GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|88223015|gb|CI222864.1|CI222864
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAEST: gi|29664828|gb|CB661103.1|CB661103
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
EST: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTG GTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
genomic: AAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGgtatgtttga ... attctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACA
cttggttatgtaaatcaatataataattattcttttcaattatttattctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAAAGCGCAAGTTCTCAACTTATTCCCATCTGACTGACATGCTGTTGTCAA
ttatttattctctt CT-rich tract
taaatcaatataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtatatattaatttgtattttgcaattttagtgtgataatcttgcttggttatgtaaatcaatataataattattcttttcaattatttattctcttagGTACGACCAGATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAAAGCGCAAGTTCTCAACTTATTCCCATCTGACTGACATGCTGTTGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - tgtgata
- - - - - - - - - - - - - - - - - - - - - ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaa