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...aaactcattctgggacggaggtagtactgttttctgcattttttgctttctttgcataatttcatgtaccgattgatcttatgcagatattcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGGGCTATTCAAACTATCCCTCGGCTGTGTTTTTTGCAAATATTAATTCCA
species | Oryza sativa |
transcript | LOC_Os02g18820.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAG GTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGEST: gi|58607342|gb|CK035375.1|CK035375
genomic: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAGgtagaaataa ... tcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
EST: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAG GTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCGTCGEST: gi|117223390|gb|CT846266.1|CT846266
genomic: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAGgtagaaataa ... tcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
EST: CTTCTTACTGCAGAG GTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGEST: gi|33678082|gb|CF306321.1|CF306321
genomic: CTTCTTACTGCAGAGgtagaaataa ... tcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
EST: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAG GTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGEST: gi|58668396|gb|CK057082.1|CK057082
genomic: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAGgtagaaataa ... tcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
EST: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAG GTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGEST: gi|29674170|gb|CB670445.1|CB670445
genomic: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAGgtagaaataa ... tcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
EST: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAG GTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
genomic: GAGCTGTCCATTTTCACCCCCATGGTGCTCCATATCTTCTTACTGCAGAGgtagaaataa ... tcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCG
ctttctttgcataatttcatgtaccgattgatcttatgcagatattcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGGGCTATTCAAACTATCCCTCGGCTGTGTTTTTTGCAAATATTAATTCCA
gattgat putative branch site (score: 34)
atattcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactcattctgggacggaggtagtactgttttctgcattttttgctttctttgcataatttcatgtaccgattgatcttatgcagatattcaatttcagGTTAATAATCTTGATTCTGCGGACTCACCATTGACCCTTGCAACCTCTTCGGGCTATTCAAACTATCCCTCGGCTGTGTTTTTTGCAAATATTAATTCCA
- - -cattctg
- - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca