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gtacttcatgtgaccataaatgtgctgcagttttttcttataaaaccgattgttttttgataatctcataatattgaatgttaatgcaattatttctggatttttgtagcgtatataaatattagcatttcaattcttctttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATTTCATATTCTATGCTGATCGGTTGATTCGATTG
species | Oryza sativa |
transcript | LOC_Os02g17320.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAG ATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATEST: gi|33675270|gb|CF303509.1|CF303509
genomic: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatg ... tttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
EST: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAG ATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATEST: gi|29643325|gb|CB648332.1|CB648332
genomic: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatg ... tttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
EST: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAG ATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATEST: gi|12623049|gb|AU173262.1|AU173262
genomic: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatg ... tttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
EST: CATTCAGACTACTTATCAG ATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATEST: gi|33794950|gb|CF323355.1|CF323355
genomic: CATTCAGACTACTTATCAGgtacttcatg ... tttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
EST: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAG ATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATEST: gi|66922909|gb|CX109757.1|CX109757
genomic: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatg ... tttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
EST: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAG ATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
genomic: ATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacttcatg ... tttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGAT
tctggatttttgtagcgtatataaatattagcatttcaattcttctttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATTTCATATTCTATGCTGATCGGTTGATTCGATTG
catttcaattcttctt CT-rich tract
tatataaatattagca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttcatgtgaccataaatgtgctgcagttttttcttataaaaccgattgttttttgataatctcataatattgaatgttaatgcaattatttctggatttttgtagcgtatataaatattagcatttcaattcttctttctttcagATACGAGGTATGCACACAATAATACGGGATGCTGCCACAACAACACATGATTTCATATTCTATGCTGATCGGTTGATTCGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT