1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagctagctacagcttctcaagctccattgccatatgaacataagctgcaatcaatgccattgtcatcaaacctacatttgtgaatttgcaatgcagTATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCATAAGTTGCTGAAGACCGAGTTCATCGTTGATCTCGACGGCATATCTGTA
species | Oryza sativa |
transcript | LOC_Os02g15750.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGCGGCGCCACCTGCAGCTCCGAGACCTCTTTCGCCTTACCCGAAT TATGCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCEST: gi|13904826|gb|BF889464.1|BF889464
genomic: CAGAGGCGGCGCCACCTGCAGCTCCGAGACCTCTTTCGCCTTACCCGAATgtaagctagc ... tgcaatgcagTAT-CCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGC
EST: CAGAGGTGGCGCCACCTGCAGCTCCGAGACCTTTTTCGCCTTACCCGAAT TATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCAEST: gi|29689177|gb|CB685452.1|CB685452
genomic: CAGAGGCGGCGCCACCTGCAGCTCCGAGACCTCTTTCGCCTTACCCGAATgtaagctagc ... tgcaatgcagTATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCA
EST: CAGAGGCGGCGCCACCTGCAGCTCCGAGACCTCTTTCGCCTTACCCGAAT TATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCA
genomic: CAGAGGCGGCGCCACCTGCAGCTCCGAGACCTCTTTCGCCTTACCCGAATgtaagctagc ... tgcaatgcagTATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCA
aagctgcaatcaatgccattgtcatcaaacctacatttgtgaatttgcaatgcagTATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCATAAGTTGCTGAAGACCGAGTTCATCGTTGATCTCGACGGCATATCTGTA
aatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctagctacagcttctcaagctccattgccatatgaacataagctgcaatcaatgccattgtcatcaaacctacatttgtgaatttgcaatgcagTATCCAGACCTCAAACCACCATCGTCGCCTTCACCATCGGCACCATAGGCATAAGTTGCTGAAGACCGAGTTCATCGTTGATCTCGACGGCATATCTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA