1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctggtctgatcatgtttgacttgaaaacttcacctacattttgtattcccatttgatggtaatgttcttacactatctgttttggcattatctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGCTTTGAGGCCTGGTGGTGTTCTTTGTAATCAGGCTGAGAGCATGTGGTT
species | Oryza sativa |
transcript | LOC_Os02g15550.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTG GGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGEST: gi|218497953|gb|FG959345.1|FG959345
genomic: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcat ... tctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
EST: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTG GGCCTGCCCAGGAACTTGTGGAGAAGCCATTTGTTGACACAATCGCAAGAGEST: gi|58695993|gb|CK084680.1|CK084680
genomic: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcat ... tctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
EST: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTG GGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGEST: gi|33793719|gb|CF322742.1|CF322742
genomic: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcat ... tctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
EST: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTG GGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGEST: gi|33794317|gb|CF323046.1|CF323046
genomic: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcat ... tctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
EST: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTG GGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGEST: gi|84117386|gb|CD151153.1|CD151153
genomic: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcat ... tctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
EST: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTG GGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
genomic: TCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGgtgagctcat ... tctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAG
ttcccatttgatggtaatgttcttacactatctgttttggcattatctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGCTTTGAGGCCTGGTGGTGTTCTTTGTAATCAGGCTGAGAGCATGTGGTT
ttcttac putative branch site (score: 2)
atttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggtctgatcatgtttgacttgaaaacttcacctacattttgtattcccatttgatggtaatgttcttacactatctgttttggcattatctgttgcagGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGCTTTGAGGCCTGGTGGTGTTCTTTGTAATCAGGCTGAGAGCATGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA