1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagagtaaatccaatgttttgaagttgatgcaggagcatcatgaagaatcattatttgcttagccccatccattctccattgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCAAACTGAGTCCGGGTTGTTCCTGAAGCTTGAGGCTGTCACCAATGGCAG
species | Oryza sativa |
transcript | LOC_Os02g14760.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAG GGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCEST: gi|12622642|gb|AU172855.1|AU172855
genomic: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAGgtaaagagta ... attgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTC
EST: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAG GGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCEST: gi|66947240|gb|AU312084.1|AU312084
genomic: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAGgtaaagagta ... attgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTC
EST: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAG GGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCEST: gi|55408497|gb|CV720873.1|CV720873
genomic: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAGgtaaagagta ... attgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTC
EST: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAG GGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCEST: gi|58606526|gb|CK034559.1|CK034559
genomic: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAGgtaaagagta ... attgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTC
EST: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAG GGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTC
genomic: ATTCTAGCCCTGAACTATAGTGGAATGGTTCTTGGCACACTTCCTATCAGgtaaagagta ... attgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTC
gagcatcatgaagaatcattatttgcttagccccatccattctccattgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCAAACTGAGTCCGGGTTGTTCCTGAAGCTTGAGGCTGTCACCAATGGCAG
ttctccatt CT-rich tract
aagaatcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagagtaaatccaatgttttgaagttgatgcaggagcatcatgaagaatcattatttgcttagccccatccattctccattgttgcagGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCAAACTGAGTCCGGGTTGTTCCTGAAGCTTGAGGCTGTCACCAATGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC