1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattttcaaagggttaagcatctactctcttattgcagagttcagaatatatagcatctgataaacattcttttcttttgttacttctagACCAAGATCTTGAAATTGAATTGGGCCATCTAAAGCACTTCTCATTTCACGAGCTTCAGAGTGCAACTGACAATTTCAACTCAAAGAACATATTAGGTCA
species | Oryza sativa |
transcript | LOC_Os02g14120.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATTTGTTGGCTAAAATATTGCAGATGGCGCTTGCCTTTTGCTTCTGCTG ACCAAGATCTTGAAATTGAATTGGGCCATCTAAAGCACTTCTCATTTCACGEST: gi|218479015|gb|FG963166.1|FG963166
genomic: CATTTGTTGGCTAAAATATTGCAGATGGCGCTTGCCTTTTGCTTCTGCTGgtaattttca ... ttacttctagACCAAGATCTTGAAATTGAATTGGGCCATCTAAAGCACTTCTCATTTCACG
EST: TGCAGATGGCGCTTGCCTTTTGCTTCTGCTG ACCAAGATCTTGAAATTGAATTGGGCCGTCTAAAGCACTTCTCATTTCACG
genomic: TGCAGATGGCGCTTGCCTTTTGCTTCTGCTGgtaattttca ... ttacttctagACCAAGATCTTGAAATTGAATTGGGCCATCTAAAGCACTTCTCATTTCACG
cagagttcagaatatatagcatctgataaacattcttttcttttgttacttctagACCAAGATCTTGAAATTGAATTGGGCCATCTAAAGCACTTCTCATTTCACGAGCTTCAGAGTGCAACTGACAATTTCAACTCAAAGAACATATTAGGTCA
atctgat putative branch site (score: 4)
cattcttttcttttgt putative PPT
ataaacattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcaaagggttaagcatctactctcttattgcagagttcagaatatatagcatctgataaacattcttttcttttgttacttctagACCAAGATCTTGAAATTGAATTGGGCCATCTAAAGCACTTCTCATTTCACGAGCTTCAGAGTGCAACTGACAATTTCAACTCAAAGAACATATTAGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC