1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttatgttcactcagtctctatggagattgatattccacattcagcctaatattattgttagttatatggtgaatattaaaaacgtaagcgtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAACCAATGAATACCATATTTACATGACCCGTAATGGCAGAATAAG
species | Oryza sativa |
transcript | LOC_Os02g14110.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86492150|gb|CI134783.1|CI134783
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86859475|gb|CI278876.1|CI278876
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|88968614|gb|CI098836.1|CI098836
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: GTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|33808186|gb|CF329982.1|CF329982
genomic: GTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|87010181|gb|CI279278.1|CI279278
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|88224138|gb|CI223987.1|CI223987
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86492839|gb|CI135472.1|CI135472
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86592386|gb|CI251040.1|CI251040
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|88245936|gb|CI245785.1|CI245785
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|29689346|gb|CB685621.1|CB685621
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86484720|gb|CI127353.1|CI127353
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|29683411|gb|CB679686.1|CB679686
genomic: ATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|88833489|gb|CI076970.1|CI076970
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|89186050|gb|CI047919.1|CI047919
genomic: ATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: GAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|88249439|gb|CI249288.1|CI249288
genomic: GAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|89179870|gb|CI044149.1|CI044149
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86494910|gb|CI137543.1|CI137543
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86494684|gb|CI137317.1|CI137317
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|287234|gb|D16037.1|D16037
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTNGGATGACANCTGAACAGGTGGNATCGCTTEST: gi|86483891|gb|CI126524.1|CI126524
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGG-ATCGCTT
EST: AGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86496294|gb|CI138927.1|CI138927
genomic: AGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAEST: gi|86494861|gb|CI137494.1|CI137494
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
EST: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAG ATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
genomic: ATCTCGAAGGCCTAGGTTCACCATTGTCATGGGATCACATCACCAATCAGgtaaagaaat ... gtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTA
cctaatattattgttagttatatggtgaatattaaaaacgtaagcgtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAACCAATGAATACCATATTTACATGACCCGTAATGGCAGAATAAG
gcctaat putative branch site (score: 69)
ttatatggtgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgttcactcagtctctatggagattgatattccacattcagcctaatattattgttagttatatggtgaatattaaaaacgtaagcgtatttgcagATTGGAATGTTCTGCTACAGTGGGATGACACCTGAACAGGTGGATCGCTTAACCAATGAATACCATATTTACATGACCCGTAATGGCAGAATAAG
-ttatgtt
- - - - - - - - ctctatg
- - - - - - - - - - - - - - - - - - cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac