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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgtttttttttaatgatccctcgactccttgtatatgcgatgtggcaattctttggaaaacctctagtctaagcaggtctgtgcaatgtattctagGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g13970.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13970.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G019358_T01 (Zea mays), 3'ss of exon 8
gtattttgtttttttttaatgatccctcgactccttgtatatgcgatgtggcaattctttggaaaacctctagtctaagcaggt---ctgtgcaa----tgtattctagGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAG
       || ||||| |  | ||     || |  ||||||||| ||||| ||| ||  ||| ||      || |||||||   |   ||||| |     | | || |||| ||||| |||||||||||||| ||||| || ||||||||||||||||||
-------gtatttttatttttatttgctgaatt-ttgtatatgagatgttgcatttgcttgaaatgatggtattctaagctaataacctgtggataacctatcttgtagGGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58611572|gb|CK039284.1|CK039284
EST:     AATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAG                         GTACTGTCTCTACTTCAAATAACGGTGGCTTCA
genomic: AATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGgtattttgtt ... tgtattctagGTACTGTCTCTACTTCAAATAACGGTGGCTTCA
EST: gi|58607818|gb|CK035851.1|CK035851
EST:     AATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAG                         GTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACCAAAG
genomic: AATCCAACCAACAGGAAGTGAAACTGATGGACCAACCGGATTGTTCAAAGgtattttgtt ... tgtattctagGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGAC-AAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggcaattctttggaaaacctctagtctaagcaggtctgtgcaatgtattctagGTACTGTCTCTACTTCAAATAACGGTGGCTTCACTAGTATAAGGACAAAG
     aattcttt  TA-rich tract