1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...ttttgaagactgctttggttgttccatttttgtcaatcattgttttggatccttttaatcttactgtagactggaataacacgttgcttgtttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG
species | Oryza sativa |
transcript | LOC_Os02g11830.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAG GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATAEST: gi|29680637|gb|CB676912.1|CB676912
genomic: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAGgttctctcgc ... tttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATA
EST: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAG GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATAEST: gi|29671007|gb|CB667282.1|CB667282
genomic: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAGgttctctcgc ... tttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATA
EST: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAG GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATAEST: gi|88726867|gb|CI750522.1|CI750522
genomic: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAGgttctctcgc ... tttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATA
EST: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAG GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATAEST: gi|29613910|gb|CB618923.1|CB618923
genomic: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAGgttctctcgc ... tttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATA
EST: ACTGGCTCCGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAG GCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATA
genomic: ACTGGCTCTGAGGATGGGACAGTTCGCTTGTGGCACTCTACTACCTACAGgttctctcgc ... tttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATA
tggatccttttaatcttactgtagactggaataacacgttgcttgtttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG
gaataac putative branch site (score: 45)
cttgtttctt putative PPT
ttttaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgaagactgctttggttgttccatttttgtcaatcattgttttggatccttttaatcttactgtagactggaataacacgttgcttgtttcttacagGCTTGAGAACACTCTTAACTATGGCCTTGAGCGAGTGTGGGCTTTAGGATACATGAAGGGTTCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgctt