1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacttccgtttgcagaggaatatcagaagtcgatctgtgtaccttccatttctttttttgccttgaaataggttttcacttgatacttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAGCTGCTCCGGCAGCTGGACTTCCGTTCCAGGTCTCTGCGAATTCCCGAG
species | Oryza sativa |
transcript | LOC_Os02g11820.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|569659|gb|D40508.1|D40508
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|58671251|gb|CK059937.1|CK059937
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: AGTCACATTCTTCATTTTTAGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|86837601|gb|CI345784.1|CI345784
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: GTCACATTCTTCANNNNNNNGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|86596732|gb|CI286645.1|CI286645
genomic: GTCACATTCTTCA-TTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGAAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|569658|gb|D40507.1|D40507
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: AGTCACATTCTTCATTTNTTGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|29678350|gb|CB674625.1|CB674625
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAEST: gi|569941|gb|D40790.1|D40790
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
EST: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAG GCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
genomic: AGTCACATTCTTCATTTTTTGGTGCACCCCCTGGAGTCTCAGGTCACCAGgtacttccgt ... cttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTA
accttccatttctttttttgccttgaaataggttttcacttgatacttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAGCTGCTCCGGCAGCTGGACTTCCGTTCCAGGTCTCTGCGAATTCCCGAG
acttgat putative branch site (score: 15)
tacttttctt CT-rich tract
atttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttccgtttgcagaggaatatcagaagtcgatctgtgtaccttccatttctttttttgccttgaaataggttttcacttgatacttttcttagGCCTCAACAGGAATGTCTATCCATGGATCTTCAGTTCAACAAACTGGTCTAGCTGCTCCGGCAGCTGGACTTCCGTTCCAGGTCTCTGCGAATTCCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA