Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG

Basic information

species Oryza sativa
transcript LOC_Os02g11050.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G137528_T01 (Zea mays), 3'ss of exon 8
-ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaacttta---ttcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
 ||    | |||   | |  ||     | ||| |     | | |  |   |  | |||||| | || | |  | |   || || || | |||     | ||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||||||||||
gtttgtta-aatccac-ttcatctgatgaactgtttgctgcc-tctcgtttcaatcttgtgttgattcgaagtaacgtttaacattttttttttggctgttcagGCCGTCTGTACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCACGTTACACAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G107362_T04 (Zea mays), 3'ss of exon 8
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctata-ccttgtgatcatgc----aactttattcactttctctttcatcatc--ttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
       |||||   ||   |||  |||| |   || ||| |||| ||||||| | ||||| |  ||      ||||| | |  |   | |||     |   ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||||||||||||
----tttcaatgcttat---taccaagcatttgtgatcgttatagttcctatagctttgtgtttgtgtttcagactttttcctttcatttttttggtgttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACGTTACCCAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GLYMA07G00420.1 (Glycine max), 3'ss of exon 8
-----ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
     | || | |||| ||  | |  |    |    |   || |  |||  |    ||  || |   |   | |      |||  || | |  | |  | | ||||| || ||||| |||||||||||||||||| |  | ||| | ||||| || || || || ||||| ||||||||||| ||||||||||||||||| || |
gcaaatgcagagcaatttgtttgtcaatgttgt-taacttaatgcaata-tttaagtattttatagcctgaccaac--gctcaaattttgtgcc-ttgtatgcagGCTGTTTGCACTGAAGCTGGAATGTTTGCTTTGAGGGAGCGGAGGGTACACGTGACTCAGGAGGATTTTGAGATGGCCGTGGCGAAGGTGATGAAAAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 3'ss of exon 8
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                    ||       || |    |  | |   || | | |  |   ||| ||   || |  | |  || |   | || |   |||||| || ||||| || || || |||||||| ||||||||||| || || ||||| || || || |||||||||||||| ||||||||||| ||||||||||
-------------------gtaagtgtttctctgtccctgcttctgtcttgttctctccaatc-tgtctctct-ctaatgtttttggttattacggtcagGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAGAGGAGAGTACATGTGACTCAGGAAGACTTTGAGATGGCTGTGGCGAAGGTAATGAAGAAAG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 3'ss of exon 8
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtg-atcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                  || |       ||||    |  | |   || | | |  | |  ||  |||  || |  | |  || |   | |  |   |||||| || ||||| || || |||||||||||||| |||||||| || || || || |||||||| |||||||||||||| ||||| ||||| ||||||||||
-----------------gtaaagtgttttctatttctctacttctatcttgttctctctacattttgcctctct-cttatgtttttggttaatacggtcagGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 3'ss of exon 8
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaacttta-ttcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
   ||  |  | | | |    | |    | |   |   || ||   |  | |    |   |||| |||  | ||  | |  || | | | ||  | | |||||||| ||||||||||||||||||||||||||  | ||||| || || ||||| |||||||| || ||||||||||||||||| ||||||||||| || |
actaagtccttattcttcatcatatca-agtgcggtcggttatctgttttgtcttctaacatcaagcatgtctaactaaacttttatataattgtttgcagGCGGTATGCACAGAAGCTGGAATGTTTGCTCTAAGGGAGAGGAGAGTACATGTGACACAAGAAGATTTTGAGATGGCAGTGGCAAAGGTGATGAAAAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 8
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctatac-cttgt---gatcatgcaacttt---attcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
         |  | | |   | || ||   | | |||  | || |   | ||   ||||    ||||    | || |   ||| |   | |      |  | | |||||||| ||||||||||| || ||||||||| |  | ||||| ||||| || |||||||| || || || |||||||| || || || ||||||||||| |
------ctgactttcctgccttcatag-gtttttgaatataatggaaaccatttacttgcatagatctgatacctctcggattgagcatttgaacttttgtttgcagGCGGTATGCACAGAAGCAGGGATGTTTGCTTTGAGGGAGAGGAGGGTTCACGTAACACAGGAAGATTTCGAGATGGCTGTAGCCAAAGTGATGAAGAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S245_17V6.1 (Physcomitrella patens), 3'ss of exon 8
----------------------ttcaaaacaatg-tgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaacttt----attcactttctctttcatcatc-ttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                      ||    ||| |  ||||  || ||||||   | | |  | |  |   | || | |  | || |  |    || |     || | |     ||      || ||||||| || ||||||||||| || ||||||||||| |||||  |  | || ||||||||||||||||| ||||| ||| | |||||||||||||||||||| |
gttcctactaaagagtcgttgttttgtcacatttctgcaattagacacagtttt-ttgtgctttttcttttcttttctatttgtttgtttttctcttaatgtttaataatctttgtgctgtcattcagGCTGTGTGCACAGAAGCAGGCATGTTTGCTCTACGTGAACGGCGTGTACATGTAACACAAGAGGATTTTGAAATGTCTGTGGCGAAGGTGATGAAGAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: PP1S7016_1V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------ttcaaaac-aatgtgcatatatacacagc-actatagaacgtcata----gctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                           || |   |   |    |||   |   |||  ||| ||    |  ||    | |  |  |  || ||    | |   | || | | ||| | || | |||   |||||| || |||||||| ||||| ||||||||||| |||||  |  | || ||||| |||||||||||||| |||||||| ||||| |||||||||||||| |
gtagctacaaacctacagtatctagggtttatttctggtagtgatacgaaggaagctgctagaggcttttgtattatgttatttaaaattttggctgttcgtttatactaattttttattgcttcaa--tcagGCTGTATGCACAGAGGCTGGCATGTTTGCTCTACGTGAACGGCGTGTACATGTGACACAAGAGGACTTCGAGATGGCTGTGGCTAAGGTGATGAAGAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ28638 (Selaginella moellendorffii), 3'ss of exon 7
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                              |   ||   ||     |    |      |||  | |  | | | ||   ||| | |||     ||| |||||||| ||||| || ||||||||||||||||| || |||||  | || ||||| || || || || || || ||||| ||||| || ||||||||||| |
----------------------------gtttgtgatgctcgcgctttagttggtccttgacgacg-gagtgtgtttttttttttttttgc--tctccagGCGGTGTGCACGGAGGCTGGAATGTTTGCTCTGCGAGAGAGGCGCGTTCATGTCACCCAGGAAGATTTCGACATGGCGGTGGCCAAAGTGATGAAGAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ04162 (Selaginella moellendorffii), 3'ss of exon 6
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                              |   ||   ||     |    |      |||  | |  | | | ||   ||| | |||     ||| |||||||| ||||| || ||||||||||||||||| || |||||  | || ||||| || || || ||||| || ||| | ||||| || ||||||||||| |
----------------------------gtttgtgatgctcgcgctttagttggtccttgacgacg-gagtgtgtttttttttttttttgc--tctccagGCGGTGTGCACGGAGGCTGGAATGTTTGCTCTGCGAGAGAGGCGCGTTCATGTCACCCAGGAAGACTTCGACATGCCGGTGGCCAAAGTGATGAAGAAGG

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 3'ss of exon 8
lower sequence: EFJ20576 (Selaginella moellendorffii), 3'ss of exon 7
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                              |   ||   ||     |    |      |||  | |  | | | ||   ||| | |||     ||| |||||||| ||||| || ||||||||||||||||| || |||||  | || ||||| || || || ||||| || ||||| ||||| || ||||||||||| |
----------------------------gtttgtgatgctcgcgctttagttggtccttgacgacg-gagtgtgtttttttttttttttgc--tctccagGCGGTGTGCACGGAGGCTGGAATGTTTGCTCTGCGAGAGAGGCGCGTTCATGTCACCCAGGAAGACTTCGACATGGCGGTGGCCAAAGTGATGAAGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86503321|gb|CI145954.1|CI145954
EST:     GAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCA
genomic: GAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTC-AAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCA
EST: gi|88273241|gb|CI388697.1|CI388697
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGGCTGGAATGTTTGCTCTTCTTGAGAGAAGGGTGCA
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAA-GCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCA
EST: gi|38476303|gb|CF960436.1|CF960436
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88834339|gb|CI077622.1|CI077622
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGTGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|8527682|gb|AU092497.1|AU092497
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|44671590|gb|CR285024.1|CR285024
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|89190682|gb|CI392535.1|CI392535
EST:     AGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: AGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58686846|gb|CK075533.1|CK075533
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58678887|gb|CK067574.1|CK067574
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|13805706|gb|AU181169.1|AU181169
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|89191000|gb|CI392853.1|CI392853
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTC-AG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86431237|gb|CI083660.1|CI083660
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29626059|gb|CB631070.1|CB631070
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTTTGCACAGAAGCTGGAATGTTTGCTTTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86425780|gb|CI070877.1|CI070877
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88961071|gb|CI096474.1|CI096474
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTTAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|89195125|gb|CI051238.1|CI051238
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58681623|gb|CK070310.1|CK070310
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86868048|gb|CI331835.1|CI331835
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86433938|gb|CI094281.1|CI094281
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|5667189|gb|AU077449.1|AU077449
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29688287|gb|CB684562.1|CB684562
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88297812|gb|CI553441.1|CI553441
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29678518|gb|CB674793.1|CB674793
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86426327|gb|CI071424.1|CI071424
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86603445|gb|CI112205.1|CI112205
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|163921150|gb|EG714112.1|EG714112
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29616715|gb|CB621727.1|CB621727
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88323465|gb|CI556096.1|CI556096
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|38480816|gb|CF964905.1|CF964905
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88256799|gb|CI354580.1|CI354580
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGACCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29673581|gb|CB669856.1|CB669856
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|89179924|gb|CI044203.1|CI044203
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88834343|gb|CI077626.1|CI077626
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86427664|gb|CI072761.1|CI072761
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86413364|gb|CI067769.1|CI067769
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58685431|gb|CK074118.1|CK074118
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88267328|gb|CI379263.1|CI379263
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|94362450|gb|CI052445.1|CI052445
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88205807|gb|CI205656.1|CI205656
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|27576305|gb|CA998999.1|CA998999
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88956169|gb|CI092457.1|CI092457
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58597197|gb|CK007725.1|CK007725
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88901811|gb|CI374419.1|CI374419
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86864761|gb|CI344270.1|CI344270
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGGTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88428369|gb|CI562635.1|CI562635
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58587248|gb|CF985556.1|CF985556
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58660687|gb|CK049367.1|CK049367
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|218502167|gb|FG956639.1|FG956639
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|16753367|gb|BM037746.1|BM037746
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88484347|gb|CI421618.1|CI421618
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGG-TTCAGGAGCCGAGCTCAAG                         NCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88264979|gb|CI368753.1|CI368753
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86414245|gb|CI068648.1|CI068648
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|58694561|gb|CK083248.1|CK083248
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86425654|gb|CI070751.1|CI070751
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88409572|gb|CI562058.1|CI562058
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29659206|gb|CB655481.1|CB655481
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|86491933|gb|CI134566.1|CI134566
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|8335415|gb|BE040375.1|BE040375
EST:     GCTTCAGGAGCCGAGGTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: GCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88286758|gb|CI517869.1|CI517869
EST:     GAAAAAGATCGCT-ANAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: GAAAAAGATCGCTGA-AAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88286732|gb|CI517843.1|CI517843
EST:     -AANAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGGTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: GAA-AAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|89164383|gb|CI101471.1|CI101471
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29658747|gb|CB655022.1|CB655022
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|29687574|gb|CB683849.1|CB683849
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88297368|gb|CI547846.1|CI547846
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
EST: gi|88955526|gb|CI091618.1|CI091618
EST:     TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAG                         GCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT
genomic: TGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 54 (downstream exon)
Score: 38

TATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGTATTGATCTGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttag ... tcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG
                        ctttattcactttctc  CT-rich tract
                      aactttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcaaaacaatgtgcatatatacacagcactatagaacgtcatagctcctataccttgtgatcatgcaactttattcactttctctttcatcatcttcagGCGGTCTGCACAGAAGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCATGTAACACAAGAGGACTTTGAGATGGCAGTGGCGAAGGTGATGAAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- -aaaacaa
- - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - -agctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca