1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctgattagtgttcatccatctgataattgtgacaattagtttctctgatccgagtgttcatccatctgataattgtgatctttgcttttcttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCGAGATCGACCTGCAGCCGATGATCAACGCGGCGGCGGCGTTCGGCGACC
species | Oryza sativa |
transcript | LOC_Os02g10480.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|86862468|gb|CI345545.1|CI345545
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|9866250|gb|AU102000.1|AU102000
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|88904257|gb|CI001990.1|CI001990
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|88246217|gb|CI246066.1|CI246066
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: CTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|88729941|gb|CI753162.1|CI753162
genomic: CTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGGTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|86531246|gb|CI171452.1|CI171452
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|88218270|gb|CI218119.1|CI218119
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: CAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|13806102|gb|AU181353.1|AU181353
genomic: CAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTNGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|88828823|gb|CI073693.1|CI073693
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: GCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|86862016|gb|CI330640.1|CI330640
genomic: GCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACAACATGCTTTCCAA-GACGACCTGATGGGGGAGGCCEST: gi|29657516|gb|CB653791.1|CB653791
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|86507268|gb|CI149901.1|CI149901
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGNCCEST: gi|86502666|gb|CI145299.1|CI145299
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCEST: gi|88989405|gb|CI043884.1|CI043884
genomic: ACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
EST: CGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
genomic: CGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTGgtaaatcccc ... ttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCC
tgatccgagtgttcatccatctgataattgtgatctttgcttttcttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCGAGATCGACCTGCAGCCGATGATCAACGCGGCGGCGGCGTTCGGCGACC
atctgat putative branch site (score: 4)
tctttgcttttctt putative PPT
tgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgattagtgttcatccatctgataattgtgacaattagtttctctgatccgagtgttcatccatctgataattgtgatctttgcttttcttggatgcagCAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCGAGATCGACCTGCAGCCGATGATCAACGCGGCGGCGGCGTTCGGCGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG