1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagcatgtcttagtattatagtatatagttaaccatattttccttgagaatcatcattttattgttctatggataaattaaattgctttgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG
species | Oryza sativa |
transcript | LOC_Os02g10310.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29672587|gb|CB668862.1|CB668862
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29612852|gb|CB617865.1|CB617865
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29657905|gb|CB654180.1|CB654180
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29671043|gb|CB667318.1|CB667318
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|163929432|gb|EG713401.1|EG713401
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|117232667|gb|CT861058.1|CT861058
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29637362|gb|CB642371.1|CB642371
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29672144|gb|CB668419.1|CB668419
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|88691997|gb|CI735572.1|CI735572
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29643533|gb|CB648540.1|CB648540
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29636552|gb|CB641561.1|CB641561
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29636597|gb|CB641606.1|CB641606
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|29664840|gb|CB661115.1|CB661115
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATEST: gi|88690598|gb|CI734677.1|CI734677
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTACCTGAAAAGAACCACGTAAACTACGATEST: gi|27548667|gb|CA766758.2|CA766758
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
EST: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG GAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
genomic: TCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAGgtgagcatgt ... tgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGAT
ttgagaatcatcattttattgttctatggataaattaaattgctttgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG
ttgcttt CT-rich tract
attttattgttctatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatgtcttagtattatagtatatagttaaccatattttccttgagaatcatcattttattgttctatggataaattaaattgctttgcgtggcagGAACCTGAACCTTTGCCTTACTTAGCTGAAAAGAACCACGTAAACTACGATATTCCTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC